barSeed - Barley Seed Development Database

Probe CUST_3940_PI390587928

Source Contig U35_25391

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3940_PI390587928	Hv_44K_v2	TCGATGTTCACTTGCATATTCTGCTATATAATGCCTGGCAAGCTGCTGCTTCCAGTTAAA	819	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.330	0.582	1.113	1.861	1.127	1.443
Raw	61.650	171.944	293.478	755.854	161.314	223.533

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1737.1	658	2e-24	244 - 303	100	60 / 60	minus	None
JLOC1	JLOC1_1062.1	551	8e-25	136 - 195	100	60 / 60	minus
Harvest35	U35_25391	893	3e-25	820 - 879	100	60 / 60	plus

Contig Sequence (893 bp)

>U35_25391 893 Hv_44K_v2
GGACAACTCCTAGGTTTGTACCGAAGCTTGATTGTCATAACGGGCATGTGCAAGAGCTGC
CCGCTGAGCCTCTGACCTCTGAAGGTGGCAATGAAGAACTGGTGAGAGGGAAGGGGAAAC
ATCCTAGGAAGAAACACCATACCGGCACTCCTAGGACAAGTCCTAGGTTTGTACCGAAGC
TTGAATGTCATAACGGGCATGTGGAAGAGCTGCCAACCGAGGCTCTGACCTCTGAAGGTG
CCGATGCAAAGCTGGTGAGAGGGAAGGTCAAACATCCTAGGAAGAAATATCATACTGGCA
CTCCTAGGACAAGTCCTAGGTTTGACCAGAAGCTTGATTGTCGTAACGGGCATGTGGAAG
AGCTGCCCGCGAAGGCTCTGACCTCTGAAGGTGATGATGCAGAGCTGGTGAGAGGGGAGG
CGAAACATCCTAGGAAGGACTACCATACTGGCACTCCTAGGACAAGTCCTAGGTTTGTAC
CAAAGCGTGAACGTCCCAACGAGCCTGTGGTAGAACTGGCAGCCGATCACAAGAGGTTCC
GCATGCTACACGAATTAATTGCCTCTCGTGACAATGCAGAATCTGCGAATACCCCATGTA
CCGACTCTGCGAACCAAGGTAGTTGACTGAATATGATCTCCATGAAACTTTCAANACTGT
TGTTGCTCTAGATTGTCTCATGCATTTTTAGGGTACCACCATGGTTGCATTTGTAGTGTG
GTCGGAGCTCACTTTGCCCCATGTATCTCAGAATTCTATTCCCATGACCGCGAATCCGTC
TTGATTGTAACTTGTGGCTGACTGTTGACTGCAGTTCTCTCGATGTTCACTTGCATATTC
TGCTATATAATGCCTGGCAAGCTGCTGCTTCCAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_25391 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None