barSeed - Barley Seed Development Database

Probe CUST_39404_PI390587928

Source Contig U35_7442

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39404_PI390587928	Hv_44K_v2	GCAAACTTTGGTGAACATATCTTACATACATGAGTACAACATTTGGATAAATTGTGGGGA	1052	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.395	0.756	1.044	1.846	1.118	1.274
Raw	145.103	440.525	533.093	1474.811	314.536	388.252

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59478.7	1631	6e-24	1573 - 1631	100	59 / 59	plus	ABC19075
MLOC	MLOC_59478.8	1555	7e-23	1499 - 1555	100	57 / 57	plus	ABC19075
MLOC	MLOC_59478.2	2795	7e-23	2739 - 2795	100	57 / 57	plus	ABC19075
MLOC	MLOC_59478.1	2238	7e-23	2182 - 2238	100	57 / 57	plus	ABC19075
MLOC	MLOC_59478.3	2564	7e-23	2508 - 2564	100	57 / 57	plus	ABC19075
JLOC1	JLOC1_38708.3	2534	8e-25	2434 - 2493	100	60 / 60	plus
JLOC1	JLOC1_38708.2	2424	8e-25	2324 - 2383	100	60 / 60	plus
JLOC1	JLOC1_38708.1	2207	8e-25	2107 - 2166	100	60 / 60	plus
Harvest21	ABC19075	1128	3e-25	1053 - 1112	100	60 / 60	plus	ABC19075
Harvest35	U35_7442	1128	3e-25	1053 - 1112	100	60 / 60	plus

Contig Sequence (1128 bp)

>U35_7442 1128 Hv_44K_v2
TGTGAAGGAATGGAGCCAACGGACATCAAATATATTACATTACATGATGGGAGGAAACTG
TGCTTGGAATGTCTACTTATGCACAATGGACTCTCCCGAATGCCAACACCTTTACATGGA
TATTCAGGAATTTTTTGAAGGATTGAATATGAAAGTAAAACAGCAAGTTCCATTACTTTT
GGTTGAGCGTCATGCTCTGAATGAAGCGTTGGAAGCTGAGAAAAGTGGACATCACCTTCC
TGAAACCAGGGGTCTATGCCTTTCTGAAGAACAAATTGTCAAAACTATCTTAAGAAGACC
AACAATTGGACCAGGAAACAGAATTATGGATATGATTACAGGACCATACAAGCTGGTCCG
ACGGTGTGAAGTGACTGCCATCCTAATACTGTATGGTCTACCAAGATTGCAAACTGGCTC
CATTCTTGCTCACGAGATGATGCACGCATATCTTCGCCTTAAAGGATACCGATCCCTTAG
CCCTCAGGTTGAAGAAGGTATCTGTCAAGTCCTATCCCACATGTGGCTCGAGTCTGAAAT
CATCGCGGGTGCTAGTGGCAACACCGCTTCCACCTCAGCATCATCATCGTCTTCGTCGGC
AGCTCCTACCACTTCGAAGAAGGGAGCAAAGACAGAATTTGAGAAGAAACTCGGGGCGTT
CATCAAGAATCAGATCGAAACAGATTCGTCCGTGGAATATGGGGATGGTTTTCGGGCAGG
CATTCAGGCGGTTGAACAATATGGCTTGAGAAGTACCCTTGATCATATGAAGCTAACAGG
GTCCTTTCCTTATTGATTATTATTCAAGTAAAGAGAAGAACATTACTCTGATTTGTGAAG
ATGGCTGCATATTTGGAGGTTATTTGGTGGAATTAGACGCATCATACATATACAACAGGA
TAAGATTAGTTTACAGTAAAGTAATAAGAAGAGAAAGAAAGATTATTCATACATAGATAT
TTGCAAATTTTCCTGTTGTCTGTGAAATAATACATGTAAGTCTTAAAGATATAGAGGTAC
TATAGTTGTTTCTCACATTGCCAGCATACAGGGCAAACTTTGGTGAACATATCTTACATA
CATGAGTACAACATTTGGATAAATTGTGGGGATAAAAAAAAAAAAAAA

Homology of Contig U35_7442 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g40490.1	487	2e-119	protein\|LIM domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g02760.8	350	8e-133
Arabidopsis v10	AT4G36860.1	553	8e-94	LIM domain-containing protein \| chr4:17358580-17361189 REVERSE LENGTH=553