barSeed - Barley Seed Development Database

Probe CUST_39403_PI390587928

Source Contig U35_7443

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39403_PI390587928	Hv_44K_v2	ATATCATCGTTGTTCCTTCCTTAGCTGCATAGTAACTGCAAAACGTAGAGTTTAACAGCG	681	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.121	2.435	1.282	0.545	0.148	0.200
Raw	940.342	1175.451	523.261	368.900	34.192	47.527

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54486.1	3876	7e-23	3775 - 3835	98	60 / 61	plus	ABC15562 ABC16217
JLOC1	JLOC1_35070.1	3113	4e-23	3026 - 3086	98	60 / 61	plus
Harvest21	ABC15562	745	1e-23	4 - 64	98	60 / 61	minus	ABC15562
Harvest21	ABC50327	557	6e-22	1 - 57	98	57 / 58	minus
Harvest35	U35_7443	744	3e-25	682 - 741	100	60 / 60	plus

Contig Sequence (744 bp)

>U35_7443 744 Hv_44K_v2
CAGGAGTAACCTGGTGCTATGGCATTGTCTTGTGGTTTGACACGGGCTTCACCAGCAGGT
TCTGCAAGGACAAGCCCGTGGTCCTCTCCACCTCTCCTTTCTCCACGCCAACTCACTGGT
CGCAGACAATCTTCACCTTCGAAGAGCCCATCGCGATGGTAAAGGATGGGTCGGTCGTTG
GCTCATCGGCATCTATTGGCACGGCTGAATGCCCAGCTGTGACGATCAGGTCCCGCATCA
GCATCGTGAGGGCCTCCGAGCACCGCAGCATAGACATATCGATCGAAACCACGGGGGTCA
GCTCAGATGGCCGGAAGCGCAGCTGGCCAGCTCAGATCTTCAATCTTTGAGCGATGATCT
GCCCTTGTGATGAAATTTTGCCGGTGCCCTTTTCCACTGTTTTAGCTGTTTGGTTGCCTA
CAGCGATTCTTCTTATCTTTTGGTGGATTTGATTGAAAACTTTCTGTGCTGAAGGAAGCA
CTTGGTCCGACTGAAGTTGTGGTGAAGACGAAAGACACATGAACTGAAGGTAAGCGTTTT
AGTGGCCAGTGTGAGTTGGTGTCCTGTGAGATGTGTGTACCTGTGAAATGAACCCGAGCG
AATTTGAATGTCGATCCAACAATGTAAGAAGTTCATCACATGATATGAGTGGAAATTTTT
CCTCTTCTCAGTAGCAGTACAATATCATCGTTGTTCCTTCCTTAGCTGCATAGTAACTGC
AAAACGTAGAGTTTAACAGCGTTA

Homology of Contig U35_7443 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44640.1	621	5e-64	protein\|ZOS7-13 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi1g19940.1	618	6e-64
Arabidopsis v10	None