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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_39391_PI390587928Hv_44K_v2TTTGAATCTGTTAGAGAGTTTGCTGTGTGTGATCAAGGAGGACAGCCAACCATGGAACTG240GeneList: saddlebrown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.5380.4490.8742.9772.2863.084
Raw 3.3113.07611.70659.25717.52224.839



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37667112882e-24274 - 33310060 / 60plus ABC48430
MLOCMLOC_37317.15042e-2493 - 15210060 / 60minus None
JLOC1JLOC1_24159.14938e-2593 - 15210060 / 60minus
Harvest21ABC153838833e-25241 - 30010060 / 60plus
Harvest35U35_74568843e-25241 - 30010060 / 60plus



Contig Sequence (884 bp)

>U35_7456 884 Hv_44K_v2
GTAGAACCAAATTAATCATCCCCCGTATCCTCAGCATTCATTCACAGCCATGGCCTAGCT
ACATATATTTCCTCAAGATTTTGGTATAAATCATCCCATCCTCAATATTCTTTCGCAACC
ATGGCCTAGCTAGCTACATATATATATTGCCCAGAATTTTTAGTCTAAAACATCCCCCTC
ATCCTCTACATTTTGCCACAACCATGGCCTAGCTACATATAATGTCGATGAATTTCTAGT
TTTGAATCTGTTAGAGAGTTTGCTGTGTGTGATCAAGGAGGACAGCCAACCATGGAACTG
GACATGTATAACATGGTGGTGCAGGCGAATGGCAGCGTCACGTACCAGCTGACCGACCCG
ACGACGTGGGGCGCGTGGGCGCACGAGGGGCACCGGCTGTGGGCGTCCATGTCGGAGGAC
TTCTGGCTGTACGAGTACAAGGTGCGGCGGTGCCCGCAGCCGTACAGCCACGACTGGACG
GCGTGCCCCTACGCGCACAAGGGCGAGCGCGCACGGCGCCGCGACCCGCGCCGCTTCAGC
TACGCCGCCGTCTCCTGCCCGGAGTACCGCGCCAACGCGCACGCGCACGCGCAGCTCGGG
CTCGCCGGCGCCGGGCACCCGCCGCCGACCTGCGCGCGCGGGCTCAGGTGCCGCTACGCG
CACGGCGTCTTCGAGCTGTGGTTGCACCCGTCCCGGTTCCGCACGCGCCCGTGCGAGGCC
GGCACGCGCTGCCAGCGCCGGATCTGCTTCTTCGCGCACTTCCCCCACGAGTTCAGGGGC
GAGGACCACGTCGCCGCCATTGCCGCCATGCCGCGGACGCCGTCCTCGACCTTCGCCGTG
CTGCGGACGCCGCCCCGCATCCTCCAGCGTGCTCCATCCAATCC



Homology of Contig U35_7456 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os07g47240.12813e-71protein|expressed protein
Brachypodium v1_2None
Arabidopsis v10None