barSeed - Barley Seed Development Database

Probe CUST_39388_PI390587928

Source Contig U35_7459

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39388_PI390587928	Hv_44K_v2	CGGTAGTTCATTTATTGTCATGCATGACACATACTAGCACAACATTTAATATGATACGGT	1477	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359543	1637	2e-24	1545 - 1604	100	60 / 60	plus	ABC16473
MLOC	AK359956	1595	2e-24	1515 - 1574	100	60 / 60	plus	ABC16473
JLOC1	JLOC1_2326.1	883	5e-22	825 - 882	98	57 / 58	plus
Harvest21	ABC16473	988	3e-25	21 - 80	100	60 / 60	minus	ABC16473
Harvest35	U35_7459	1557	3e-25	1478 - 1537	100	60 / 60	plus

Contig Sequence (1557 bp)

>U35_7459 1557 Hv_44K_v2
CGCAACACAACCAGCACGGCGGCGGCGGCGTCCAGCGGAGGTCGGCGGTGGCGGCGGCCG
CGCAGATTAGCCGAGTGTTCGTTGATCCGCAAGCCGGTTTAAGAAGCGCAATTGGGCAGT
CCAGTTCAACACGGAGCCCTCCAATACGGCCGTCAAAACCAAGCCTCAGTGAGCGGCGTG
GAGGCACGCGGTGGCCGGCACCCTGAGCCTGAGCGGCATCCGCCACCACCACCAGCACAG
CCTGCGCTACTTGCCCCTCAGGCCTCCTGTGCCGCCCATTGCCCTTGGCCTCGCCGAGCG
CTTCTTCTCTTCCTCCTCATCCAAGCGCTCCGCCAAGAGATCCGCCGCAAAGAAGGCCAC
GCCGTCCCCGATGGACTCTGCCGGCGGCGACCCGTTCTATGTTGTCCGCAAGGGGGATGT
CATTGGCATCTATAACAACCTCGCCGACTGCCAAGCTCAAGTCAGCAACTCGGTCTGCGA
TCCTTCTGTGACTGTGTACAAAGGCTATTCTCTTCGTAAAGACACCGAGGAGTATCTCGC
TGCGCGCGGGTTAAAGAATGCTCTGTATTCCATTAATGCAGCAGATGCAAAAGACGAATT
GTTTGATGATCTGGCACCCTGCCCTTTCCAGCAACCTGATGGAACCTCTACTTTGAAAAG
GCCACAGGAGATGGAAACTGGACCATCAACGAAACATCCCAAAGTCGCTGAACAGGAGCC
ATTACCTGATAGTCATCTATCCTGCATTCTTGAATTTGATGGTGCTTGCAAAGGAAATCC
CGGGAAATCAGGGGCTGGTGTAGTAGTAAGGCGGTCAGATGGAGCTATGATTGCCCAACT
ACGCGAGGGTTTGGGTATTGCAACGAATAACGCTGCTGAATATCGTGCATTGCTCCTGGG
GTTGAGATATGCTGCTAAGAAGGGATTCAAGTATGTTCGTGCTCAAGGCGATTCTAAGCT
TGTCTGTAACCAGGTCCAAGACCTCTGGCGTGTTAGGAATGATAATATGGCGGACTTGTG
CAAGAAAGTCAAGGACCTGAAGGGAAGTTTCCTTCAGTTTCAAATCAACCATGTTTTGAG
GGAGTTTAATGCAGATGCAGATGCCCAAGCTAACTTTGCTGTTGAACTTCCTGTTGGTGA
AATTCAAGAGCAGTCAAACTTCCCATGCTAGTGGTTGCGCTTCAGAGTAGTTTTTTTTTT
GCCGCGACTGAACAAGTTAAAGCTCATTTCACATTGACCGAAGCAAGAGTTCGCTGTTGA
GCAGTGGGAAAATGCGTAATTGGCAGTTGATCTGTGAGGTTACGAGCTGGAGTCGAGATG
TTAGGAGGAAATTGTGTCTAGATTTTTGTATGAGCTTGAGTACCCTAGCGCTTGTGTTAG
GCTGGTTGTAATGGGTAGTATCATATACTAGTATATATCATGATACTAGTGTATGATACC
ACATCCGTAATGCATAGCATCATATATTAGTATCATACGGTAGTTCATTTATTGTCATGC
ATGACACATACTAGCACAACATTTAATATGATACGGTATCATAATATATACGTCAAT

Homology of Contig U35_7459 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g08050.1	352	6e-129	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi3g12670.2	353	4e-156
Arabidopsis v10	AT1G24090.1	353	1e-62	RNase H family protein \| chr1:8520834-8522737 FORWARD LENGTH=353