barSeed - Barley Seed Development Database

Probe CUST_39380_PI390587928

Source Contig U35_7467

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39380_PI390587928	Hv_44K_v2	TGAGATGATGTATTTAGGTATGATCTTGTGACCCTATGAGGCGCTATGAAATAATCATTT	1016	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.692	6.943	1.714	0.564	0.168	0.192
Raw	699.689	1211.946	246.399	134.391	13.518	17.479

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60108.1	2656	2e-24	2553 - 2612	100	60 / 60	plus	None
JLOC1	JLOC1_39167.2	2269	8e-25	2144 - 2203	100	60 / 60	plus
JLOC1	JLOC1_39167.1	1387	8e-25	1262 - 1321	100	60 / 60	plus
Harvest21	ABC15993	1103	3e-25	28 - 87	100	60 / 60	minus
Harvest35	U35_7467	1103	3e-25	1017 - 1076	100	60 / 60	plus

Contig Sequence (1103 bp)

>U35_7467 1103 Hv_44K_v2
CCAAGGAAGTACGGGCCCGACGCGGCCATGTCTCTGGCACTGGTGACCGTGCCGACGGCC
GCGGGCTCGGCAGCTGTGACGCAGGGTGCTTCTGGGCGGCCCTTCTCACCCACGCTGCCG
GGAAACTTCGTGCCATCGGCGTCGCCGGATGGAGGGAAGAAACGTGGCCGGCCCAAGGGA
TCTACCAACAAGCCCCGCGTGGATGGTGGTGGGCCGGCAGGAGTTGGATTCACACCTCAT
GTTCTTACGGTTCAAGCTGGAGAGGATGTATCGTCAAAGATTATGTCATTTTCTCAGAAT
GGAACTCGTGCAGTTTGTGTTCTCTCAGCAAATGGTTCCATATCAAATGTAACACTTCGT
CAAACTGGTACATCAGGTGGAACTGTAACATACGAGGGCCGATTTGAGATACTGTCACTC
TCTGGCTCAATCTTTGTAACGGACAACGGAGGCCAGCGTACCCGAACAGGGGGCCTCAGT
GTTTCGCTGGCCGGTCCTGACGGTCGTCTCTTGGGTGGAGGAGTCGCAGGACTTCTCATA
GCAGCTTCTCCAATCCAGATAGTAGTGGGAAGCTTCAATGCTGGTGGGAAAAAAGAGCCG
AAGCCGCAGGCTCCTTCTGAGCCCGTACCACTGAAGGTTGTTCCTAGCACTGGGATCGGG
ATGGCGGCCAACAGCCCCCCTTCAAGAGGTACATTGAGCGAATCGTCTGGTGGCACTGCA
AGCCCAAGACATCAAGGCTTCGCCTCCACCAACAATAACCAGCCGCCGATCTTGTCCAGC
ATGCCCTGGAAATGAACTCAGCATCCTTGACCGAATTCGGGCATCGATAGACTGTCGGTG
AACTGCCTCCCTGGCAGGAAGTAGAAATGTCACTTCTGTCTAACTAGCTCCCATTTAGTC
GTATAAATCAGAAGTTTAATTAGGGAGCATTGTAGCTGGTATAAGTGGTAACTGCAGATG
TTGTGTAGGTCGTCTCAGTTTGAATTTCTGTGCCAGTTAGTTGTTTATTGTTGTCTTGAG
ATGATGTATTTAGGTATGATCTTGTGACCCTATGAGGCGCTATGAAATAATCATTTTCTT
ATGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7467 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g40150.2	355	1e-104	protein\|AT hook motif domain containing protein, expressed
Brachypodium v1_2	Bradi3g40180.1	369	1e-122
Arabidopsis v10	AT2G33620.1	351	2e-63	AT hook motif DNA-binding family protein \| chr2:14234749-14236563 FORWARD LENGTH=351