barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_39377_PI390587928Hv_44K_v2TTTGTAGTTAAATTCAAGTCTGTAAGCTGGATCATTTCCTTCCGGCACAGCACATGCAAA510GeneList: darkolivegreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0400.1200.8662.2811.8123.512
Raw 3.24923.709153.043612.964177.997369.086



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_38580.414743e-21618 - 67110054 / 54minus ABC16640
MLOCMLOC_38580.57183e-2120 - 7310054 / 54minus ABC16640
JLOC1JLOC1_25095.18042e-21697 - 75010054 / 54plus
Harvest21ABC166405923e-25520 - 57910060 / 60plusABC16640
Harvest35U35_74705833e-25511 - 57010060 / 60plus



Contig Sequence (583 bp)

>U35_7470 583 Hv_44K_v2
GCTTCCTTCTCTCCTTGGGTGTTCATCCCTGGACGCATGGACGTCCACAAGGTGAAGATG
CGTGGCTTGTGCTTGGTGTTGCTCATGGCGGCTCTGTTGTTGCTTCCCGGATCCGAAGGC
AAAATTTGCAAGGAGTATAGCGAAACCTACACCGTTTCTGAATGCACGAGCGGACCATGT
GCCGAGCACTGCCACGACGAGGGCTTCGTTGAAGGGGAGTGTAAAGCGAGTGAGTTTGAA
CTTGATGATTACCGATTCTGTCTCTGCAAGAAACACTGTTGATGATGCTTCAGGATGTCA
AGCAAAAAGGTAATAAGATCCTGCGGCAGAGCTGTCTGTAACATCCCAAAACATTCCGAT
TTTGGAATGCTAAATAAATACATGACTAAATATAAATGTTTCCATTCTATGTTGCCCATT
TTTCTAGAGGTGGTTGTATCCCATGAGGGACTGGGCTCAGTTGAAAGCCAGATGCCCGCA
TGTTGTACTTGTTTCTAAAAACAGTCACGGTTTGTAGTTAAATTCAAGTCTGTAAGCTGG
ATCATTTCCTTCCGGCACAGCACATGCAAAAAAAAAAAAAAAA



Homology of Contig U35_7470 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None