barSeed - Barley Seed Development Database

Probe CUST_39376_PI390587928

Source Contig U35_7471

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39376_PI390587928	Hv_44K_v2	GCCGAAATCAGCTGTGATCAACTGTACTATTCAGAAGCTGTACTCATGCTGTTCTATAAA	550	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.933	3.799	1.137	0.882	0.515	0.441
Raw	181.498	130.573	33.924	40.767	8.015	7.577

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357841	1427	2e-23	1276 - 1333	100	58 / 58	plus	ABC18743
MLOC	MLOC_36457.1	813	2e-23	594 - 651	100	58 / 58	plus	ABC18743
JLOC1	JLOC1_23472.1	954	1e-23	608 - 665	100	58 / 58	plus
Harvest21	ABC18743	624	3e-25	15 - 74	100	60 / 60	minus	ABC18743
Harvest35	U35_7471	624	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (624 bp)

>U35_7471 624 Hv_44K_v2
CCGCGCCCTCCGCTGCGCCGACTGCAACGAGAACGGGTTGGTGCGCTGCGCTAACTGCTC
CTCCTGATCCATCCATGCCGCTAATTGAATTGAAGGATTAGAGTCGGTAGGTTCGTCGTC
AGATCAGAGAGAGGCGCATTTTCGGTTCCTTGGGGTTCTTGATTTATGATTTATTATGTG
TCCTAGCTAAATCGATCGATCAATCCGATCGTTTGGGGATCGGATTCTTAGCTGCTCATG
GATGGAAGAGAACGAATTGTTCTTGGCTCCTTTGCCGCGGAATCGCCGTCCGGTGGTGGC
GATTGATGATGATGAATAAGAGCCGGTGCTTGTATATGTGTGTAAAATTTGGCGCTGATA
TTAGCTTGGGTGATTAATGTATGACGAAGAACTGATGTAAATACTTGAGCTTGGGAGTGA
TCAATTCTTGCCTAGTTCCCTGTTTATCCATGGTTTTGGTCAAATCTCTTCATGGATGTA
ACTACAGTAGCAATACAGTTCGATACCTCATCAAGAACTGGCCCAACTGTACTGGCATGA
AGTCTTTAAGGCCGAAATCAGCTGTGATCAACTGTACTATTCAGAAGCTGTACTCATGCT
GTTCTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_7471 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None