barSeed - Barley Seed Development Database

Probe CUST_39375_PI390587928

Source Contig U35_7472

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39375_PI390587928	Hv_44K_v2	ATGGATATCTGGAGACGGTGGATGCAGGACACAAAGCACCTAATGAAGCTAAAGTTATGG	1255	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61671.5	3356	2e-24	1195 - 1254	100	60 / 60	plus	ABC08814
MLOC	MLOC_61671.3	2264	2e-24	1281 - 1340	100	60 / 60	plus	ABC08814
MLOC	MLOC_61671.1	2564	2e-24	1548 - 1607	100	60 / 60	plus	ABC08814
MLOC	MLOC_61671.2	2297	2e-24	1281 - 1340	100	60 / 60	plus	ABC08814
MLOC	MLOC_61671.4	2722	2e-24	1751 - 1810	100	60 / 60	plus	ABC08814
JLOC1	JLOC1_40302.21	3006	8e-25	1173 - 1232	100	60 / 60	plus
JLOC1	JLOC1_40302.20	3703	8e-25	1414 - 1473	100	60 / 60	plus
JLOC1	JLOC1_40302.19	3514	8e-25	1328 - 1387	100	60 / 60	plus
JLOC1	JLOC1_40302.18	3302	8e-25	1469 - 1528	100	60 / 60	plus
JLOC1	JLOC1_40302.17	3093	8e-25	1260 - 1319	100	60 / 60	plus
JLOC1	JLOC1_40302.16	3138	8e-25	1260 - 1319	100	60 / 60	plus
JLOC1	JLOC1_40302.15	3446	8e-25	1260 - 1319	100	60 / 60	plus
JLOC1	JLOC1_40302.14	3093	8e-25	1260 - 1319	100	60 / 60	plus
JLOC1	JLOC1_40302.13	3275	8e-25	1397 - 1456	100	60 / 60	plus
JLOC1	JLOC1_40302.12	4025	8e-25	1736 - 1795	100	60 / 60	plus
JLOC1	JLOC1_40302.11	3943	8e-25	1740 - 1799	100	60 / 60	plus
JLOC1	JLOC1_40302.10	3367	8e-25	1534 - 1593	100	60 / 60	plus
JLOC1	JLOC1_40302.9	3232	8e-25	1268 - 1327	100	60 / 60	plus
JLOC1	JLOC1_40302.8	3472	8e-25	1269 - 1328	100	60 / 60	plus
JLOC1	JLOC1_40302.7	3671	8e-25	1743 - 1802	100	60 / 60	plus
JLOC1	JLOC1_40302.6	3415	8e-25	1537 - 1596	100	60 / 60	plus
JLOC1	JLOC1_40302.5	3456	8e-25	1270 - 1329	100	60 / 60	plus
JLOC1	JLOC1_40302.4	3612	8e-25	1409 - 1468	100	60 / 60	plus
JLOC1	JLOC1_40302.3	3477	8e-25	1274 - 1333	100	60 / 60	plus
JLOC1	JLOC1_40302.2	3612	8e-25	1409 - 1468	100	60 / 60	plus
JLOC1	JLOC1_40302.1	3382	8e-25	1549 - 1608	100	60 / 60	plus
Harvest21	ABC16078	1322	3e-25	1256 - 1315	100	60 / 60	plus
Harvest35	U35_7472	1322	3e-25	1256 - 1315	100	60 / 60	plus

Contig Sequence (1322 bp)

>U35_7472 1322 Hv_44K_v2
TACACGCTCAGCTCCCTCCACTTCGCCTGTCCTCCTGATTCGCACCGCTTCCCTTTTTGC
CGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAACCCTAGAATCTAGAAGACGT
CCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAGCGGCGATGGGGAGGCGGAAG
GAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGGTCAAGCTCGACCTCTTCCTC
GATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAGGGGAGGAAAACCGCGAGCAG
CAAACTGGTGTTCCCACTTCACCATCTTCGTCAGATAAGAAGGAAAATCCTCTAGCGTTG
CTTGGGCAATATAGTGATGATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGT
GAAACTAAGGGAAGTTCAACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTA
ACTGGGGATAAAGGCGATGCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAA
GCATCTCAAGCCGATGATGTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTT
GCCCCTGAGCCAACTCTGGAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCA
TCTGGCATGCAAATCGTGGGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAA
AGTAATCAGTGTTACTACTGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGAT
GGATTAGCTTCGGGGGTTGCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATG
GGCTACTCTGTAGAAGCTCAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCT
AGTGATGTATCTGTTGGGAATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCAT
GATGCTTATGCTTACACTGGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTG
CAGCTTGCAAAATATGGTGAGGATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACAT
GTTGCCATTGACAGTCTTGAGTTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGT
AATGCACTCTCCTCGTATGGATCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCAC
CTTAAGCAACTAGAACTTTCAGTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGA
TATCTGGAGACGGTGGATGCAGGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCC
TC

Homology of Contig U35_7472 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g19470.2	861	1e-167	protein\|WW domain containing protein, expressed
Brachypodium v1_2	Bradi1g43210.1	863	0.0
Arabidopsis v10	None