barSeed - Barley Seed Development Database

Probe CUST_39374_PI390587928

Source Contig U35_7473

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39374_PI390587928	Hv_44K_v2	GAAGATGGGGCAGCTCTGTAGAAAAATTATACAGTACAAGGATTAGTTCTTTCCAAAAAA	1091	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.373	1.417	1.175	0.849	0.309	0.347
Raw	1101.676	1792.868	1295.990	1489.095	187.568	229.144

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248191.1	3126	3e-21	2976 - 3029	100	54 / 54	plus	None
MLOC	MLOC_39955.3	761	3e-21	683 - 736	100	54 / 54	plus	None
MLOC	MLOC_39955.1	1089	3e-21	943 - 996	100	54 / 54	plus	None
JLOC1	JLOC1_26099.1	1076	2e-21	884 - 937	100	54 / 54	plus
Harvest35	U35_7473	1162	3e-25	1092 - 1151	100	60 / 60	plus

Contig Sequence (1162 bp)

>U35_7473 1162 Hv_44K_v2
GAGCAGTGGTATGAGCCATAACATCCAAAGTCGGGGAGACAAGCATATCAGACTTTCGAC
TTGCTTCATTGAAGGCATTGCTGGCATCTTTTCTCTCGTCTCCTCATGCCTGGCCACTTT
ATTTAGCCCAAGGAACTGAACTCTTCAGAAAAGGGAAGCTAGAGATAGGCACTACGCTCG
CAGAGTTTTGTTCGCATGCCTTGCTGGCTTTGGATGTTCTTACGCACCCTCGAGCCCTTT
CTCTAGAAAAGGCAGGTCCTTTAGTTCCTGCACTCAACCGCAGTGAACCAGAAAAGGCAA
TTTTTGGTGCTGGCACATTTAACTTTTCACCATCCAAAGGGCAGGGCCAGGTTATTGTGG
ATGAAGATACTTATGATGATTGGTTGCCATCCATCAAGGATAATGAACCGACAGAAAAGT
CCACTGTAAAAGAAGTTCTGCAAATTGATTCAGATACAATTGCTGAGGCAGTAGAAGATG
TTCCTGCATGCAACAAGAGGGATGCCATTATGTTGGTTGCGACCACAGAAGAAACCTCCG
AGCCAATGACAGTGGATAATCCTTCTAGCTCCAATGCTGTTTCAAATCCAATCTACTCAA
GGCCACCTGAAACACAGAAAGCCGCAGCTACCCCTTTTCGAGAGGAAAAGCGCGGCTACC
ACGTTGATTCTCTGGTTCAGAATACAAGCGCAGCTGTTAACCTACCATTCCGCAATCTGG
CAACCTCAGGTGAAAAACCATCTGACCCAGGTGTTGCTGCTCTGAGCAGCTATAAAGATG
TCTCTTTAACCCGCTTCATTCAGCCCATCAAGGCTGACTTGTCTGATACAGAGTCGGGAG
ACTCGATGCCAGAGATACAAGACGGTGACCCGGATTCCGACTATTGAGCTTCCTTCAAGG
ATAAACGTATACCCTTGCTTTTTTTTTGCCCATCTTTATCAGCATATCCCTTGGCATTGA
GCCATTTTTGCTATATACTACATGTCTCAGTTTATCTAAGAATGACCATCGGCATAACGT
TCGTGTATTCTGTTGCTTTCCGTACCTATGACACTTGCATGGTTTGCCAGCGTCTTTGTG
CCCAGTGCAAGGAAGATGGGGCAGCTCTGTAGAAAAATTATACAGTACAAGGATTAGTTC
TTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7473 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g22990.1	883	1e-61	protein\|expressed protein
Brachypodium v1_2	Bradi3g11327.1	630	4e-76
Arabidopsis v10	None