barSeed - Barley Seed Development Database

Probe CUST_39373_PI390587928

Source Contig U35_7474

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39373_PI390587928	Hv_44K_v2	CTGTCAGTCAGTCAGTGTGTGTGATGAACCGAACAGTGGCTTGCGGTTCTTGTTAAAAAA	607	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.662	2.649	1.093	0.878	0.198	0.400
Raw	205.514	329.295	116.879	150.720	11.559	25.712

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38121.1	3313	6e-21	3021 - 3073	100	53 / 53	plus
Harvest21	ABC18488	677	3e-25	608 - 667	100	60 / 60	plus	ABC18488
Harvest35	U35_7474	677	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_7474 677 Hv_44K_v2
GCAGGAGCTACAGGGCTCACACCGGAGAAGAGATCCGTTGGTCGGACACCGAAGAAGCGG
ATTCTCCCCTGAAGCTCCTGTGGAACCACAGCGACGCCATACTCTGCTGCTCTCTGAAGC
CTGCTCCGATGTTCACCTTCGGCAACAACGCGGCCCTTGACATGCTGGAGACGACGCTGG
TGAACCTGCAGGACATCTCGCTGGAGGCGATCCTGGACGACGAGGGGCGCAAGGCGCTGT
GCGCCGAGTTCTCCAAGGTCATGCAGCAGGGTTTCGCGTACCTCCCCGGGGGCGTGTGCA
AGTCGAGCATGGGGCGGCAGGCGTCGTATGAGCAGGCGGTGGCGTGGAAGGTGGTGGGTG
ATGACGTGGCGGGCGCGCCGCACTGCCTTGCCTTCATGTTCGTCAACTGGACCTTCCTGT
GACCGCCTCGCCCATCTGCTTGATCAAAAGACCTGAAAACTGCCGTTCGTTTTGTATGGT
TCAGTTATCTATCTATGTAACCATCCTATCTATGGACCTATGGTTTGCATGTTTGTTGCC
GTGAACCGAAACATAGTTGGCATTCCTTCCTGATCGACAAGAAAGACCTATGTATGTGTG
TGTGTAACTGTCAGTCAGTCAGTGTGTGTGATGAACCGAACAGTGGCTTGCGGTTCTTGT
TAAAAAAAAAAAAAAAA

Homology of Contig U35_7474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41860.1	856	7e-77	protein\|START domain containing protein, expressed
Brachypodium v1_2	Bradi4g01887.1	850	4e-83
Arabidopsis v10	AT2G34710.1	852	5e-52	\| Symbols: PHB, ATHB14, ATHB-14, PHB-1D \| Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein \| chr2:14639548-14643993 REVERSE LENGTH=852