barSeed - Barley Seed Development Database

Probe CUST_3936_PI390587928

Source Contig U35_25395

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3936_PI390587928	Hv_44K_v2	GAAAACATGGTGAGTACCAGGTTAGATCAAAGTATAGTTGATGGCAAGTATCCTGCGAGT	1150	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60439.2	3714	2e-24	1210 - 1269	100	60 / 60	plus	ABC00383 ABC14230
MLOC	MLOC_60439.1	4178	2e-24	1591 - 1650	100	60 / 60	plus	ABC00383 ABC14230
JLOC1	JLOC1_39410.1	4153	8e-25	1588 - 1647	100	60 / 60	plus
Harvest21	ABC00383	2260	3e-25	2 - 61	100	60 / 60	minus	ABC00383
Harvest35	U35_25395	1211	3e-25	1151 - 1210	100	60 / 60	plus

Contig Sequence (1211 bp)

>U35_25395 1211 Hv_44K_v2
GTCAATGGTTGCAGCCGGAGAAGGTAATATGCGGAGGGGGAAATGGAACCAAAAGAAGGA
CAATTTCAATAAGAAGCAAGCTACTGTCATTCCAACCAAATCAATTTCTAAAGTAAAGCT
GCCTAACAGTATTCCCAAAGGAAATATCTCGACTTCACCTGCACCTTCTCCTGAGCAACC
TGGACCAAGCCTTCCTTCATTTCTTTTTGAGTCAGATGCAAATAATGAAGTCATAGTACC
TTTTGATTTGAACAAAGAGGAGAACAGTAAATTTGAGAAAGCAACGCCAAATAGGATCTC
TCGAGGACTAAATCACAGGGCAATTTCTGTTTCTGCAAGTGTTGATGATAATACAACTGA
TGTGCGAAGCCTGCTGATATCTATACTCTCAGAAAATCCAAAGGGAATGAACTTAAAGGC
CTTGGAGAAAGCTGTTGCAGATGCAATTCCAAAGGCTTCAAAGAAAATAGAGCATATCGT
TAAGAATGTTGCAGATTACCAATCATCAGGGAGGTATTTGCTGAAACCTGAACTGGAAGT
AGAAAACTCTAATCATGCATCTGGCAGTGGAAGGACTATCGATGAGAACATTGAAGAAAT
TGCTCCAAGCTTAAGGATAGATGATCCTGATATATTTGAGAAGATTGAAATTGGGGGCTC
CCCGGTTTCAGCTGCAGGAGACGAAAAGGTCCATGACAGTGATGCTAAAGCAGGTACCTC
TAGTGAGAGTGGAAGTGATAGTGACAGCGACAGTGACAGTAGTGGCAGTGGAAGTGATAG
TGGGAGTCAGAGTAGAAGTGCTGGAAGCGGAAGTGGGAGCAGCAGCGACAGCGATAGTGA
TGCTTCATCAAGCAGCAAGGAAGGATCTGATGCATTTGTGGATATTACAAGTGATGATAA
CAAGCCAGATACAGCATGTAGGAAAGTAGCAGATGAACTGAAGTTGTCTTCCTCACCAGT
AGATTTTCCAGCATTTGATGGTGATGATGAGCAAATTGATATTGGAACAAATCTGGATTA
TAAGAGTGCATCATCACACATTGATCTGAATAATTTGAATGTCGACAACGATGAGCCGGC
ATATGCTGGTACAGCAACTGAGAAATTCGGTGCAAGCAATGTAGACATGCCATCAGAATT
TCCAGGAAGAGAAAACATGGTGAGTACCAGGTTAGATCAAAGTATAGTTGATGGCAAGTA
TCCTGCGAGTA

Homology of Contig U35_25395 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08820.1	1179	5e-136	protein\|expressed protein
Brachypodium v1_2	Bradi1g72092.1	1231	2e-155
Arabidopsis v10	None