barSeed - Barley Seed Development Database

Probe CUST_39368_PI390587928

Source Contig U35_7479

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39368_PI390587928	Hv_44K_v2	GGTACTCTATGCTTACACAAGTTGCAACTTTGATTCACTTTATATGGCAAAATGACATCA	891	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370407	4270	2e-24	1021 - 1080	100	60 / 60	minus	ABC18351
MLOC	MLOC_9815.2	3387	2e-24	608 - 667	100	60 / 60	plus	ABC18218 ABC18351
MLOC	MLOC_9815.1	2398	2e-24	622 - 681	100	60 / 60	plus	ABC18351
MLOC	MLOC_9815.4	2780	2e-24	608 - 667	100	60 / 60	plus	ABC18218 ABC18351
JLOC1	JLOC1_6365.2	2895	8e-25	625 - 684	100	60 / 60	plus
Harvest21	ABC18351	672	3e-25	584 - 643	100	60 / 60	plus	ABC18351
Harvest35	U35_7479	980	3e-25	892 - 951	100	60 / 60	plus

Contig Sequence (980 bp)

>U35_7479 980 Hv_44K_v2
ACCAACCTTCCCGATCCCCAACCCCCATGATCCGCAGGAGGCGCGGGCACGCCGCCGCCT
AGGGTTTCCACCCCCCGCCCCTCCGATGGAGTCGCTTCCGCGGAAGCGCAAGGGCGCGCG
CTCCCTCGCCGGCTCCCTCCACGACGACTCGGCGGACCGCAAGCGGACCTGCCGGGAGCG
GAAGCCGCGGCCCGAGAAGAAGAAAAAGAAGCCCTCCGCCGGCGGCGATGACGCCGCCAC
CGCCTCCGGCCGCGGCGGCGTGGTCATGACGGCGCCGCCGGCCAGCGGCCGGGCCACCCC
GGACAGCCCCGGGAGGGGGCTCAAGCGCAAGGTCGGCTGCATCGAGTCCGCCACGCGGAT
AGGCCGCAAGAAGCGCCTCGAGACCGAGTACGAGCTCGGCGACGAGATCGGCCAGGGCAA
GTTCGGCTCCGTCCGGATCTGCCGCGCCAAGGCCGGCGGCGAGGAGTTCGCCTGCAAGGC
CCTCCCCAAGAACGGCGAGGAGACGGTCCACCGCGAGGTCGAGATCATGCAGCACCTCTC
CGGCCACCCCGGCGTCGTCACGCTCAAGGCCGTCTTCGAGGACGCCGACAAGTTTTACCT
CGTCATGGAGCTCTGCAGCGGCGGCCGCTTGCTGGACGAGATGGCCAGGGACGGCATCTT
CTCCGAGCAGCGAGCCGCCCTTGTCATCAAGGATCTAATGTCGGTCGTCAAGTACTGCCA
CGAAATGGGCGTCATCCACAGGGACATTAAGCCGGAGAATATTTTGCTCACCAAGACTGG
CAAGATGAAACTAGCAGATTTTGGATTGGCAGCACGAGTTACTAACGGTAAATTCTTGCT
AAAATTTCACTTTGAAGCCCTACTAGATGATAAATAAGTTGTGTTCGTGGGGGTACTCTA
TGCTTACACAAGTTGCAACTTTGATTCACTTTATATGGCAAAATGACATCAATTAGAAGT
ACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7479 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g29170.4	262	4e-123	protein\|CAMK_CAMK_like.38 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi4g32590.1	449	9e-133
Arabidopsis v10	AT1G12680.1	470	5e-81	\| Symbols: PEPKR2 \| phosphoenolpyruvate carboxylase-related kinase 2 \| chr1:4320123-4322269 REVERSE LENGTH=470