barSeed - Barley Seed Development Database

Probe CUST_39365_PI390587928

Source Contig U35_7482

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39365_PI390587928	Hv_44K_v2	AGTTGATGTAGATGGAAATGCATTGCCAAAACTTGTGTATATGGCGCGCGAGAAGAGACC	861	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.018	0.914	0.720	0.664	1.345	1.198
Raw	3.621	4.882	3.112	4.737	2.919	2.930

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251112.1	2462	2e-24	867 - 926	100	60 / 60	plus	ABC18520
MLOC	MLOC_1157.1	671	2e-23	414 - 471	100	58 / 58	minus	None
JLOC1	JLOC1_713.1	796	1e-23	178 - 235	100	58 / 58	plus
Harvest21	ABC18095	934	3e-25	836 - 895	100	60 / 60	plus
Harvest35	U35_7482	960	3e-25	862 - 921	100	60 / 60	plus

Contig Sequence (960 bp)

>U35_7482 960 Hv_44K_v2
AGACCACCCGTTCCCTCCACACTCGCGTTCTCGCTCGCACTAGCACTTGGAGTAGCAGGC
AGGGAGGATGGCCGGGAGCAGCGTCTCCGGCGGCGGCGGCGGCGGCCGCCCGTCGCTGTT
CGCGACGGAGAAGCCGAAGCGGGTGCTGGCGTACCGGCTGTACGCGGGCACCATCTTCGC
GGGGATCCTCCTCATATGGTTCTACAGAGCCACCCACATCCCGGCGAGGGGCAGCAGCAG
CCTGGGGTGGCGGGCGGGGCTCGGGCTGCTCGTGGCCGAGCTCTGGTTCGGCCTCTACTG
GGTCCTCACCCTCTCCGTGCGCTGGAACCCGGTCCGCCGCACCACCTTCAAGGACCGCCT
CTCGGCCAGCTATGACGATGACCAGCTCCCCGGCGTGGACATATTTGTGTGTACAGCGGA
CCCAGCTCTTGAACCACCCATGCTTGTCATCTCCACGGTTCTGTCTGTCATGGCTTATGA
CTACCCGCCAGAGAAGCTAAACATCTATTTGTCTGATGATGCTGGTTCCGCGATAACATT
CTACGCTCTTCATGAGGCATCTGAGTTTGCAAAGCACTGGATTCCATTTTGCAAAAATTA
CAAGGTGGAGCCCAGGTCCCCAGCTGCCTACTTTGCCCAAGGAGATACCCCTCATGATGC
TTGTAGCCCTCAAGAATTGCTTCGCATGAAGGAGTTGTACAAGGATCTGACAGATCACGT
GAATTCAGTAGTACATTCAGGCAAGATTCCCGAGGTTCCAGAATGCAACCGCAGAGGCTT
CTCTGAATGGAACGAGACGATAACACCTGGAGATCACCCTTCAATAGTCCAGATTCTAAT
TGATAGAAACAAAAGAAAGGCAGTTGATGTAGATGGAAATGCATTGCCAAAACTTGTGTA
TATGGCGCGCGAGAAGAGACCTCAGGAACAACATCACTTCAAAGCTGGATCATTAAATGC

Homology of Contig U35_7482 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49332.1	746	6e-149	protein\|CSLE2 - cellulose synthase-like family E, expressed
Brachypodium v1_2	Bradi3g56440.1	738	2e-174
Arabidopsis v10	AT1G55850.1	729	2e-80	\| Symbols: ATCSLE1, CSLE1 \| cellulose synthase like E1 \| chr1:20876752-20879414 FORWARD LENGTH=729