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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_3935_PI390587928Hv_44K_v2TGCAACAAGACTGCTGTCGCTGGGTTGCAGCCGTTTCCTCGCGACATCATGTCATGGACA688GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3910.9081.3811.3650.4890.341
Raw 24.79826.82634.12753.0075.5413.604



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_3792.219382e-24769 - 82810060 / 60plus None
MLOCMLOC_3792.312172e-24769 - 82810060 / 60plus None
MLOCMLOC_3792.416162e-24767 - 82610060 / 60plus None
JLOC1JLOC1_2283.216238e-25782 - 84110060 / 60plus
JLOC1JLOC1_2283.115788e-25782 - 84110060 / 60plus
Harvest21ABC244237493e-25689 - 74810060 / 60plus
Harvest35U35_253967493e-25689 - 74810060 / 60plus



Contig Sequence (749 bp)

>U35_25396 749 Hv_44K_v2
CTGCCTCCTCCTTCTCATCGCCGGCTCCTGCCTGCGGCAGTCGCCGTCGCCTACTCCCTG
CCCCTAGTCCCGATCCCGCGCCGTCACTTGCCCATTCCCTCTTCGCCTTCCATCCCGTGC
CTCCCCCATATCTCAGCCGCCTCCGCTCAGTCCTCCCCGCGCAGAGCCGCCGCCGCCGCC
GCCTGCCTACGCCCGGACGGACTGCTGGTTGACAGGCTCCAGTCCAGGACGTGGCTGATA
CAGTGACACCTGGGGCCCTGCCGTTCCATTGGGCTAGCGATCCGAGGGACGAGACGGGCG
CACACCAGGTGTTCGAGGGAATGCACCTCTGAAACGCCTCTTCCCACTCTGGCCTCCGCG
AGACGAACGAGCAGAGCCAAGAATGACGTTCGGGTCTGTCATCGAGAGGAGCGTGGCGCG
GCCGCTCATGAGGCTGGTCACCATGGGCGGCGCGCCCATCCTGCAGCAGCTGCACCTGGA
GGAACGGCTGCTGCGTCGCACCAGCGATAACTGGTGCATCGTCAACGATGGCACGGCTCC
TCCCACCATTGTCATGGGCGTCTCCGGGAAGGTCTCTGAGCTCGTCGAGATACGGCCTGT
GCTTCAAGATCATGTGCCGGTGGTAAGGCGGTTCAGTGGAGGTGGCACTGTAATTGTTGA
CCAGGGGACGGTGTTCGTCACCTTCATCTGCAACAAGACTGCTGTCGCTGGGTTGCAGCC
GTTTCCTCGCGACATCATGTCATGGACAG



Homology of Contig U35_25396 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os08g33810.12712e-52protein|lipoate protein ligase, putative, expressed
Brachypodium v1_2Bradi3g36750.12754e-63
Arabidopsis v10None