- Probe CUST_39358_PI390587928
- Source Contig U35_34033
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39358_PI390587928 | Hv_44K_v2 | TTCATGATAAAGTACTTGCAGCAGCAGCTGAAGCAGCTATGAGCATCTCTGCTTTCCTTT | 326 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.569 | 1.519 | 1.048 | 0.697 | 1.091 | 0.522 |
| Raw | 25.642 | 33.339 | 23.389 | 22.430 | 12.469 | 6.963 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_34033 | 395 | 3e-25 | 327 - 386 | 100 | 60 / 60 | plus |
Contig Sequence (395 bp)
>U35_34033 395 Hv_44K_v2 TCAGGGAAGCAACAAGCATCTACATAAAACCAAGCTCACAAAAAAATGCTGCTGGTCAGC AATTTTCAAGAACAAGGATGATAAAGCTTGTGGGTTGATATTATTTTATCAGACAGGCGT CATAGAATTGAGATCTTTGCCAAGCTTAGATATTCTTGCTGAGAGCTCCTTGATGGAGTT ACTAAGATGGAGTTACAAGACAGGAATGGATAAAACTATGAGCTCCTCAAATGGACAAAT TGCTCTGGTTAATGGATCTGAATTTGCAATCATCTCTCTTATAGACTCGGAGAATGACTT CGGGATTCCAGAATCATTGCCGTGCCTTCATGATAAAGTACTTGCAGCAGCAGCTGAAGC AGCTATGAGCATCTCTGCTTTCCTTTCTGGTCTGC
Homology of Contig U35_34033 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |