- Probe CUST_39357_PI390587928
- Source Contig U35_34037
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39357_PI390587928 | Hv_44K_v2 | AAGAACGTCGAGTCTGCCACGAAGTATCTTCTTAGCAAGCTCAAGGACCTTCAGTTCTTT | 86 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.378 | 0.447 | 0.881 | 1.384 | 1.299 | 1.739 |
| Raw | 15406.767 | 28610.710 | 49115.667 | 118151.433 | 39371.533 | 58283.600 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_77840.1 | 992 | 7e-23 | 471 - 530 | 98 | 59 / 60 | plus | ABC00097 |
| JLOC1 | JLOC1_51890.1 | 1059 | 4e-23 | 497 - 556 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC42912 | 502 | 1e-23 | 376 - 435 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC34452 | 659 | 1e-23 | 302 - 361 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00862 | 898 | 1e-23 | 420 - 479 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_34037 | 259 | 3e-25 | 87 - 146 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14522 | 903 | 1e-23 | 439 - 498 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_14521 | 870 | 1e-23 | 513 - 572 | 98 | 59 / 60 | plus |
Contig Sequence (259 bp)
>U35_34037 259 Hv_44K_v2 TCAAGAAGCAGTTTATTGCTTACATCAAGCGCTACATCAAGAACCTCACTGCCAAGCTTG AAGGTGAGGAGCTAGATGCTTTCAAGAAGAACGTCGAGTCTGCCACGAAGTATCTTCTTA GCAAGCTCAAGGACCTTCAGTTCTTTGTGGGCGAGAGCATACAGTGCGATTAGCACTTGA CCTCCTTCAGCCCATGAGCGAAATAGAGGAAAGTTGGATCAGCAGCTCCCTCCCTGTAGT AGGCAAACACCACGCTGCC
Homology of Contig U35_34037 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |