barSeed - Barley Seed Development Database

Probe CUST_39355_PI390587928

Source Contig U35_10081

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39355_PI390587928	Hv_44K_v2	TATGCGGCCTGAGCACCTACGCTGCCAAGAGCCAGTACCTGGCCAACATCAACCGCATCG	99	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73815.2	2293	2e-24	112 - 171	100	60 / 60	plus	ABC15337 ABC15476
MLOC	MLOC_73815.3	2232	2e-24	107 - 166	100	60 / 60	plus	ABC15337 ABC15476 ABC16360 ABC25448
MLOC	MLOC_73815.1	1030	2e-24	116 - 175	100	60 / 60	plus	None
JLOC1	JLOC1_49155.2	2257	8e-25	131 - 190	100	60 / 60	plus
JLOC1	JLOC1_49155.1	2251	8e-25	131 - 190	100	60 / 60	plus
Harvest21	ABC21175	610	3e-25	100 - 159	100	60 / 60	plus
Harvest35	U35_10081	610	3e-25	100 - 159	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_10081 610 Hv_44K_v2
AGTAGGCTAGTAGCATGGCTCACCACCAGGTCCTGTCTGTGGTCATCGTCGCCGCCGCGC
TGCTCGCTTCCCCCGCCGCGGGAGTATACCCGTGGACAATATGCGGCCTGAGCACCTACG
CTGCCAAGAGCCAGTACCTGGCCAACATCAACCGCATCGGCGCGACGCTTCCCAGGAACG
CCTCCCAGTCACCGGACCTGTTCGCCACGGCCCTGGTCGGCGCCGTCCCTCAGCAAGTCT
GGGCCCTGGCGCTCTGCCGCGGCGACGCCAACGCCTCCTACTGCTTCACCTGCCTCGACC
AGGCCTTCCAGGACCTGCCCAACGCCTGTCCCTACAGCCGGGACAGCACCATCTACTACG
ACTCCTGCGTGCTCCACTACTCCAACATCCAGTCCCGCCCCGACGACGACACCACCTACA
ACCCCACGCGCCCGCTCCGCAACAACTTCAACGCCACGGCCGAGCCGGCCCGGTTCCAGA
GCGTCGTCGCCGCGCTCCTCAACGCCACCGTCAACTACGCCGTCACCAACTCCACGCGGC
TCTATGCGTCCGGGGAGGCCGACTTCGACCGGGAGCTCCCTAAGGTGTACGCTTGGGCGC
AGTGCACGCC

Homology of Contig U35_10081 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35310.2	519	8e-61	protein\|TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed
Brachypodium v1_2	Bradi1g25552.1	671	2e-82
Arabidopsis v10	None