barSeed - Barley Seed Development Database

Probe CUST_39350_PI390587928

Source Contig U35_10084

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39350_PI390587928	Hv_44K_v2	ACAGATCAGAAGCAGGATATATGCCGTCTGCTCGGTTATATCCATGGTTTCTACAAGGAG	129	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373304	2251	2e-24	135 - 194	100	60 / 60	plus	ABC48237
MLOC	MLOC_41172.1	352	2e-24	4 - 63	100	60 / 60	plus	None
JLOC1	JLOC1_26859.1	356	8e-25	6 - 65	100	60 / 60	plus
Harvest21	ABC20249	678	3e-25	130 - 189	100	60 / 60	plus
Harvest35	U35_10084	678	3e-25	130 - 189	100	60 / 60	plus

Contig Sequence (678 bp)

>U35_10084 678 Hv_44K_v2
CTTCTCCTTCCATCCTCCCCAACCTTCCCCATCCACACCCACAAGAAACCGCCGGCGAGG
AAAGCAACTCGACTGACAATGCATGGCAAGCGAGACCGCCTCATCGGCGACCGTTGTCTT
TCCGTCCTCACAGATCAGAAGCAGGATATATGCCGTCTGCTCGGTTATATCCATGGTTTC
TACAAGGAGGCGCTCGACCGGCTTCCGTTGGGGGCGATTCCCTCGCTGGCCGCGCGCCTC
CTCAAGGCCGGCATGCTCATCGGCTTCCTCGACCCAGTCTCCAACATCATCGCCAACACC
ATCGCCTACATCCCTTCACCGACGCCTGGATCCGTCGACGACAACGAGGAGGGGGATGAG
GCACCGTCGTCGGACTGGATCCTCTCGAAGATCATCACCGACACCAACGACTTATTTGTC
TTCGAACTGCCGCTTTCCGGGCACCAGTCTACGACCGTCGCGCGGCTGTCGCTTGACGGT
CTTGTCAGCTTCCTCACCTCCCACTACCGCTACCTATGCGACAGGGAAGCCATGAGCTAC
TTGCTCCTGGCCAGGGCCGATCTTCTCACCGCTGTGCGCCTAATCGAGCGAGATCGTGGC
AATAGGTGCAACTCCTTTAGTATTACCTCCACTACAGCCAAGATCGCCCTGGAACGTGCC
GCTGTGTCTGCGAGGCAT

Homology of Contig U35_10084 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g09210.1	261	1e-76
Arabidopsis v10	None