barSeed - Barley Seed Development Database

Probe CUST_39348_PI390587928

Source Contig U35_10085

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39348_PI390587928	Hv_44K_v2	CAGACACCGACGTGGTTCTCAAAGACCAGCAGCTTGAAATGGCTGCTGCTCACACTTCCC	532	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367321	2305	7e-23	362 - 421	98	59 / 60	plus	ABC16219
MLOC	MLOC_60440.4	1654	7e-23	1197 - 1256	98	59 / 60	minus	None
MLOC	MLOC_60440.5	1887	7e-23	1272 - 1331	98	59 / 60	minus	None
MLOC	MLOC_60440.6	1883	7e-23	1272 - 1331	98	59 / 60	minus	None
MLOC	MLOC_60440.2	1618	7e-23	1230 - 1289	98	59 / 60	minus	None
MLOC	MLOC_60440.1	1864	7e-23	1234 - 1293	98	59 / 60	minus	None
MLOC	MLOC_60440.3	1855	7e-23	1230 - 1289	98	59 / 60	minus	None
JLOC1	JLOC1_39411.3	1960	4e-23	568 - 627	98	59 / 60	plus
JLOC1	JLOC1_39411.2	1933	4e-23	541 - 600	98	59 / 60	plus
JLOC1	JLOC1_39411.1	1775	4e-23	383 - 442	98	59 / 60	plus
Harvest21	ABC22967	397	1e-23	272 - 331	98	59 / 60	plus
Harvest35	U35_10085	660	3e-25	533 - 592	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_10085 660 Hv_44K_v2
CCGGGGAGAGGTCCAGACCGACATCCCGGGCTCTCATGCCCACGGCCCACAAGCAAGCCA
GGAACACCGAGCTTCGTGGCCCCACAGGACACGTGGAGCTCGCCCGCGGCTCCTGTTCGT
GCTACAATAACAGTTTCCCCCGCTTCCATTTCCTCCCTCCCTTTCTCCAGCGCGCTGCCC
CCATCCAGCGAGAGCTCGTCGCGCTCGTCGATCTCGCGTCGAATTGGCGGGGTTAAAACC
GTGGAGCTGAACCCCAGCGCAGGGGGCTTGGGTTTAGCCGGTGGCTTCCGGTGCGGCTCC
GCGGCGGTGGGGTAGAATGGAGTGGAAGCTGACTAATTAAGTAGAGGCGTACGCCGCAAA
TGGTTGACGCGGTGCAGCTGTCAGTCATTCAGAACCAAGATTGTGCAGGCTCATACATCC
CTTCGAGTGCACAGGGAAAGGGGAGGAGTGATAGTTCCAGTCCACACCGATCATGGGTGG
GGTCTGTTCAAGGAAGCGAAGCCAATTGGTGGAGGAGGACGACGACTCCCTCCAGACACC
GACGTGGTTCTCAAAGACCAGCAGCTTGAAATGGCTGCTGCTCACACTTCCCCGCAGCAG
CTCTGATGTCTCCCGCAAGGGACAAGGGAAGTACCCTGACCGGTGCCCGACGCTCATGAA

Homology of Contig U35_10085 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None