barSeed - Barley Seed Development Database

Probe CUST_39345_PI390587928

Source Contig U35_46015

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39345_PI390587928	Hv_44K_v2	CCGATGCACGTTACATATCACAGACAGTGAAGCTAGGAGCATTGGGGATCCCACCATATA	85	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15202.1	3258	2e-24	1104 - 1163	100	60 / 60	plus	ABC02665
JLOC1	JLOC1_10417.1	3389	8e-25	1104 - 1163	100	60 / 60	plus
Harvest21	ABC45529	242	3e-25	86 - 145	100	60 / 60	plus
Harvest35	U35_46015	242	3e-25	86 - 145	100	60 / 60	plus

Contig Sequence (242 bp)

>U35_46015 242 Hv_44K_v2
TGGAAGGGGGGAGGGGGGGGGGGTCNNCNACATTGATGGAGGACCATACTTCCACTTCAA
AAACACTACCCTTCCAAGCTGTTCNCCGATGCACGTTACATATCACAGACAGTGAAGCTA
GGAGCATTGGGGATCCCACCATATANATCATTCTCTTTGGTCNAACTCGAGGCGGCGACG
AACAACTTCNCAAACTCTTGCCTGCTCGGGCAAGATTCTTATGGCGAGATGTATCTGGGG
AA

Homology of Contig U35_46015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None