barSeed - Barley Seed Development Database

Probe CUST_39344_PI390587928

Source Contig U35_10087

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39344_PI390587928	Hv_44K_v2	TCCGGTGAAGGAGTTGGGAAGAGTAATATCTAAGCGAAATTTTTGACGGGACGTGTCTTG	508	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20206.1	2235	7e-23	1571 - 1630	98	59 / 60	minus	None
Harvest21	ABC20547	572	3e-25	509 - 568	100	60 / 60	plus
Harvest35	U35_10087	572	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (572 bp)

>U35_10087 572 Hv_44K_v2
GATCGACTATTGCATTTCTGTATTTTCTGTTGATGCCATCTAACATATTAAACTATAACC
TCTGATTACTTCAACTCAACAGGCTGATGGGTTACTACATACTACCTGTGGGACACCGAA
CTATGTTGCTCCTGAGGTTATTGAAGATAAGGGCTATGATGGTGCGTTTGCAGACCTTTG
GTCTTGTGGGGTAATTCTTTTTGTGATGCTTGCTGGATATCTGCCTTTTGAGGATGACAA
CGTCTCAGCCCTTTATAAAAAGATCTCTGGAGCTCAGTTTACTTGTCCCTCTTGGTTTTC
TGATGGAGCTAAAAGACTGATTCCCAGGATTCTGGATCCTAATCCGTCAACTAAACAACA
AGCAGCCAGCACGCGACACCGAGCCACCACGCGCCTCCTCCCCTGCCGCTCCATCGTCTG
CCGGGACGACGTACTGGGCCTTGCTGGACGGCGAGGACCAACGGATCAATGGCCGTCCAC
CCTAGGCCAAGGTTGATGTTTCACTGCATCCGGTGAAGGAGTTGGGAAGAGTAATATCTA
AGCGAAATTTTTGACGGGACGTGTCTTGGTTG

Homology of Contig U35_10087 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g20380.8	267	3e-52	protein\|CAMK_KIN1/SNF1/Nim1_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g17250.3	449	1e-52
Arabidopsis v10	None