- Probe CUST_39338_PI390587928
- Source Contig U35_22060
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_39338_PI390587928 | Hv_44K_v2 | TGGTAGCCCCGACATCTTGTTGTTTTGGTGCTGGATGGAAGTCTATGAACACAGAGTTAT | 557 | GeneList: mediumpurple3 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 3.394 | 3.188 | 1.185 | 0.780 | 0.350 | 0.466 |
Raw | 1185.037 | 1694.004 | 563.556 | 570.180 | 93.978 | 136.600 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_65396.2 | 625 | 2e-24 | 541 - 600 | 100 | 60 / 60 | plus | None |
MLOC | MLOC_65396.1 | 1385 | 2e-24 | 650 - 709 | 100 | 60 / 60 | plus | None |
JLOC1 | JLOC1_43032.3 | 657 | 8e-25 | 579 - 638 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_43032.2 | 703 | 8e-25 | 625 - 684 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_43032.1 | 714 | 8e-25 | 636 - 695 | 100 | 60 / 60 | plus | |
Harvest21 | ABC15373 | 620 | 3e-25 | 558 - 617 | 100 | 60 / 60 | plus | |
Harvest35 | U35_22060 | 620 | 3e-25 | 558 - 617 | 100 | 60 / 60 | plus |
Contig Sequence (620 bp)
>U35_22060 620 Hv_44K_v2 GATCTCCTTGGCTGCGTGGAAGGAACCAGAAGAGGCGAGCTCTCGAATCCGCGGCGCCTC GTTTCTTCGCCGACTCGATCTGCAGGTGGCATGGACGGGAAGAACCTCGGCAGTGGACAA CAAGCTCCACAAGCTAAACCAGATGCCATGACTGATGACCAGGTGGCCCTGAAGGACGCC GCAGTTTCTGACACCGGAAATGCAAATGGCCATGATGTTGTGGATATGAACATGGAAGCT GCCATCTCCGCCGATGATGTCATGCGAGCCGGCGGATTCGGTGCCAAAGACGACATTGGC AGCCTCCTACCGACGGCGATGGACTCCACTGACTTCGAGGCCTCGCTGCGGGACGCCCGC GACTTTGAAGGCGAGAAGGAGCAACCGTCGCGCCCTGGGCTGGGTTACAGGGCAACGGAA GCTGACGCGGGAATCAAGCCGTCGGACGCACCGCAGCAGTGATCCTGCTTCATGGGGCAA CTTCTGTTTCAGAAAGACAAAACACGGCATCCATGTTTGACGTTTCTGTAGTTTTCCAGC TTCTGTTGTGCTTCAGTTGGTAGCCCCGACATCTTGTTGTTTTGGTGCTGGATGGAAGTC TATGAACACAGAGTTATGCG
Homology of Contig U35_22060 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | Bradi2g21136.2 | 127 | 3e-65 | |
Arabidopsis v10 | None |