barSeed - Barley Seed Development Database

Probe CUST_39336_PI390587928

Source Contig U35_22062

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39336_PI390587928	Hv_44K_v2	GCCGTTCGAATTTGTATGCAACGAGCTATAGCTAAATTGAGAATTGATTGTGGTATAATT	279	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.104	1.681	1.469	0.743	0.170	0.176
Raw	12451.390	15849.150	11620.667	8746.157	783.864	868.942

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_22062	453	3e-25	280 - 339	100	60 / 60	plus

Contig Sequence (453 bp)

>U35_22062 453 Hv_44K_v2
GAGAAGCACACTTTGAGATCATGGCTCGTGTCGCTGCACTAGTGGCCCTTCTCGTCCTAG
TTTCGCTGGTTGCCTCAGCGATGTCGTCGGAGGAACTGCATTGCTGCACAGACCATCATG
ACTGGGGCAATGGGTTGAAGAACAAGGGTTGCAGGCTGCCGGAGCAGAACGTCGAGTGCA
ACACGTGGTGCCAGTCGGACTGCCGTGGTGGCGAGTGTGTAATGCGTACCGGGCTGCACT
TCTGCCATTGTTACTGTTGAGGAGGCGCGGCGGTATTTCGCCGTTCGAATTTGTATGCAA
CGAGCTATAGCTAAATTGAGAATTGATTGTGGTATAATTAAATTTGATTTGGTTGTATGG
AACAAAGATATTTAGATTAATAATATGAGAACAGAAATTTCAAATAAATATGTTTTATCG
GTGGTGAGTCACTCCTCCTTATAAAAAAAAAAA

Homology of Contig U35_22062 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None