barSeed - Barley Seed Development Database

Probe CUST_39326_PI390587928

Source Contig U35_10090

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39326_PI390587928	Hv_44K_v2	TTGAAGAGGATATGGTTGCGTTCTCTTGCTGTGTCTTTGACGGTGGTGATGAGGAAAAAA	748	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.350	3.220	1.333	0.707	0.636	0.585
Raw	451.388	910.257	337.092	263.918	88.576	88.156

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356821	2329	2e-24	1220 - 1279	100	60 / 60	plus	ABC26361
MLOC	MLOC_75925.2	1848	2e-24	766 - 825	100	60 / 60	plus	ABC26361
MLOC	MLOC_75925.3	1911	2e-24	766 - 825	100	60 / 60	plus	ABC26361
MLOC	MLOC_75925.1	1850	2e-24	763 - 822	100	60 / 60	plus	ABC26361
MLOC	MLOC_75925.4	1114	3e-21	33 - 86	100	54 / 54	plus	ABC26361
JLOC1	JLOC1_50648.4	1982	8e-25	722 - 781	100	60 / 60	plus
JLOC1	JLOC1_50648.2	2055	8e-25	769 - 828	100	60 / 60	plus
JLOC1	JLOC1_50648.1	2051	8e-25	765 - 824	100	60 / 60	plus
JLOC1	JLOC1_50648.3	2132	2e-21	878 - 931	100	54 / 54	plus
Harvest21	ABC25257	679	3e-25	481 - 540	100	60 / 60	plus
Harvest35	U35_10090	947	3e-25	749 - 808	100	60 / 60	plus

Contig Sequence (947 bp)

>U35_10090 947 Hv_44K_v2
GGCTCCGTCTCCCTCGACGGCGTGCCCCGCATCATCTCCCGCCCCGCGCCCGGCTCGCTC
TACCGCAGCCCGCAGCTGTACGCCCGCCTGCGCCCCGAAATGGACGCCGACAACGCCACG
GACGCCCTAGCAACTGTATGGCGGCATGCTTACAAAGGTGGTGTTTGGCAACCTTGCATA
AGCAATAATACCTATGGTTTGCCCGAACCAAACGGCTACATATATGTGGAGGCAAATGGT
GGTTTGAATCAGCAAAGGACATCGATATGCAATGCAGTTGCAGTTGCTGGTTTTCTGAAC
GCAACTCTTGTAATTCCAAATTTTCACTACCACAGCATTTGGAGGGATCCTAGCAAATTC
AATGATATCTATGACGAAGACCACTTTGTCCAACGTTTGAAAAATGATGTTCGAGTGGTT
GACAAGGTGCCTGGATTCATAATGGAGCGGTTTAGTAACAACTTGAGTAATGTTTATAAT
TTCAAGATAAAGGCTTGGTCTCCTATTCAGTACTACAAAGATGTTGTTCTTCCGAAGTTG
ATTGAAGAAAGGGTCATAAGGATATCACCTTTTGCAAATCGGCTTTCAGTTGATGCTCCG
CCTGCTGTTCAGCGACTGAGATGTCTGGCTAACTTTGAAGCCTTAAAGTTTTCTAAACCA
ATCACTGCTTTATCTGACACTTTAATTTCTCGAATGAGAGAAAAAAGTGTGGAAAACAAC
GGGAAATATGTAGCTGTGCATCTCCGTTTTGAAGAGGATATGGTTGCGTTCTCTTGCTGT
GTCTTTGACGGTGGTGATGAGGAAAAAAAGGAATTGGATGAGGCCAGGGAAAGAGGCTGG
CGTGGAAAATTTACTAGGCCTGGACGTGTAATAAGGCCTGGAGCAATAAGGATGAATGGT
AAATGTCCACTTACACCTTTGGAGGTTGGATTAATGCTTCGTGGAAT

Homology of Contig U35_10090 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38490.1	564	0.0	protein\|growth regulator related protein, putative, expressed
Brachypodium v1_2	Bradi2g54630.2	457	0.0
Arabidopsis v10	AT2G01480.1	567	2e-171	O-fucosyltransferase family protein \| chr2:216980-220341 FORWARD LENGTH=567