barSeed - Barley Seed Development Database

Probe CUST_39317_PI390587928

Source Contig U35_10096

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39317_PI390587928	Hv_44K_v2	AGAGCTTTGCAGCTTGGGGGAGCCTTGCTGGTCATTTTTTCTTTCTTTGGAAAAATCGGA	594	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59151.2	6531	2e-24	4403 - 4462	100	60 / 60	minus	ABC10351 ABC16747
MLOC	MLOC_59151.1	7222	2e-24	5266 - 5325	100	60 / 60	minus	ABC10351 ABC16747
JLOC1	JLOC1_38469.2	4154	8e-25	1901 - 1960	100	60 / 60	plus
JLOC1	JLOC1_38469.1	4249	8e-25	1996 - 2055	100	60 / 60	plus
Harvest21	ABC23725	605	3e-25	530 - 589	100	60 / 60	plus
Harvest35	U35_10096	670	3e-25	595 - 654	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_10096 670 Hv_44K_v2
TTTCCTCATGCTGGTAGTTGTGTAGAAATAAGCATGCCCCTCATTGTATTGCTTCTTCTG
TGCACCCTGTACATGAGAAAAATATCCCTGTTTGGAAACCATATCTTCCTCATCTATGCA
GTACCACTCAGTGTTGGCATTATATGGGTGTATGCGTTCTTCCTAACTGCTGGTGGCGCA
TACAACTTCAAGGGCTGCAGTTCAAGTATACCCAGTTCGAATATATTATTGGGTTCATGC
AGAAGACATGCAGAAATTATGAGGCGTTGTCGAACTGATGTTTCTAATGCTTGGAGTACT
GCTGCCTGGGTGAGGGTTCCGTATCCATTGCAATGGGGCCCTCCTACATTTCATTTCAAA
ACAGCTATCATTATGGTGATAGTTTCAGTGGTTGCATCAGTTGATTCGCTTTCAGCATAT
CATGCTGCTTCGTTGCTAGTCAATTTAAGCCCTCCAACACGTGGAGTTGTTAGCAGAGGG
ATTGGCCTTGAGGGGATTTCTACTTTTATCGCCGGACTATGGGGTACAGGAACTGGGTCG
ACAACATTAACAGAGAACATCCATACCCTTGACACAACCAAAATGGCCAGCAGAAGAGCT
TTGCAGCTTGGGGGAGCCTTGCTGGTCATTTTTTCTTTCTTTGGAAAAATCGGAGCTCTC
CTTGCTTCTA

Homology of Contig U35_10096 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g30810.1	812	1e-107	protein\|nucleobase-ascorbate transporter, putative, expressed
Brachypodium v1_2	Bradi1g27197.1	785	2e-113
Arabidopsis v10	AT4G38050.1	709	8e-82	Xanthine/uracil permease family protein \| chr4:17869529-17872461 REVERSE LENGTH=709