barSeed - Barley Seed Development Database

Probe CUST_3930_PI390587928

Source Contig U35_37374

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3930_PI390587928	Hv_44K_v2	TAACAATAGATACTGACTTTTCTTCTTGCTCAATAGCTTTGCGCTGCTCTAAACATCAAT	254	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.193	1.038	1.186	0.881	1.159	1.032
Raw	7.058	7.806	9.794	10.189	2.806	3.056

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251807.1	2609	2e-24	2124 - 2183	100	60 / 60	plus	ABC02155
MLOC	MLOC_65067.2	2639	2e-24	371 - 430	100	60 / 60	minus	ABC02155
JLOC1	JLOC1_42788.1	2900	8e-25	2170 - 2229	100	60 / 60	plus
Harvest35	U35_37374	757	3e-25	255 - 314	100	60 / 60	plus

Contig Sequence (757 bp)

>U35_37374 757 Hv_44K_v2
CACGCGTCCGATTCGGACCAGGGCTGCCTAACTTTTCTCGTACTGCCCAGCAGCGAACTT
AGTAGCAGTAGCATGAAGGGTAATACTTGAAAAGCACTGAAGTACATCAGACATAGCATT
TATATTGTTTTTTGGATGATTTTAAAATGGAGGGCAGTTTTATTTTCTCAAACACGCACC
AAAATTATTAGTATTAGAAGAAAAACGCCAAGAAGGCGCAAAATGAGTATAGTCTTAGGC
ATTATTTGCTGATATAACAATAGATACTGACTTTTCTTCTTGCTCAATAGCTTTGCGCTG
CTCTAAACATCAATAAAAAAAGCGTGGATAGAGACCTTGACGTTTACCGCAACTTACTGT
CGAAATTGGTTCAAGCCAAGGAACTTCTTAAGGAATACGTCGAGAGGGAAAAGAAGAAGA
GAGCAGAGAGATTGGAGACGCCCAAGCCGAACGAGGCTGTTGCAAAATTCGATGGAAGCA
CTTATCCCTTGAAGCATTAACTCAACCTTTCCCCAGAGGAGAGCTTGTCCGGATAACAGA
TATTAACAGTTATACATCTGGATAGCGTTGAGAACTATCGGGGGCATCTTTGGCTGCTCT
TAGCGTGGTGTAGTACTCGGCGGTACAAAAAGATCCAGATTATTCGCAGTAGTTGGTATT
TTGTAATTTCTCCTTCTCTGTGTTCGAATGTACCGTTTTCTTCACTTCGTTGACAATATA
TGAAGAGTTATCTGGTGGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_37374 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None