barSeed - Barley Seed Development Database

Probe CUST_39307_PI390587928

Source Contig U35_22074

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39307_PI390587928	Hv_44K_v2	TTCCGTGGGATTGCATTTGTTGGTGGATTTAGCTATGCAGATGTTCTTGACTCGGCGAAA	790	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69639.1	5134	2e-24	991 - 1050	100	60 / 60	minus	ABC16509 ABC16521 ABC17771
JLOC1	JLOC1_46161.2	4834	8e-25	3681 - 3740	100	60 / 60	plus
JLOC1	JLOC1_46161.1	5238	8e-25	4085 - 4144	100	60 / 60	plus
Harvest21	ABC16509	954	3e-25	791 - 850	100	60 / 60	plus	ABC16509
Harvest35	U35_22074	954	3e-25	791 - 850	100	60 / 60	plus

Contig Sequence (954 bp)

>U35_22074 954 Hv_44K_v2
AGATCTAAAGCTTGGGAAGGACGGGGTTCTGTTGCATGTTGACCTGGCTAAGGGAAAGCG
AAGACTTGGTTGTTCTGCTCTCGCACAAGCGTTTGATCAAATTGGAAATGACTGCCCGGA
CATAGAAGATGTCCCTTACTTGAAAAAGGTCTTTGAGGTTGTTCAAGAATTGCTCAGTGA
ACGTCTGATTTCTGCCGGTCATGACATTAGTGATGGTGGGCTTATTGTCACTATTCTTGA
GATGGCATTTGCTGGTAACTGTGGTGTGAACCTCAACATAGAATTAAAAGATAATGACCT
TCTTCAAACACTTTTTGCGGAGGAGCTTGGTCTTGTAATTGAAGTGCATTTGGATGACCT
TGATGTAGTGAAGCAAAAACTTCATGCTGCAGGGGTTTCTGCTAATGTGATAGGAGAAGT
AACTGCAGCACCAGAAATAGAGTTGCTGGTTGATGGTGAGGTGCGTTTGAAAGAAAGAAC
TTCAGACCTCAGAGATTTGTGGGAGGAGACAAGCTTTCAGCTTGAGGAGCTACAGCGTCT
GAAATCTTGTGTCAAGCTTGAGAAAGAAGGCTTAAAAAGCCGAACATCACCTTTATGGCA
TTTGTCTTTTACGCCCAAATTCACAGACAAGAAACTACTGTCTGCATCCTCGAAACCGAA
GGTTGCCATCATTCGCGAAGAAGGGAGCAACAGTGATAGGGAAATGTCTGCTGCATTCCA
TGCTGCTGGTTTTGAACCGTGGGACATCACGATGTCGGATCTCTTGAACCAAAAGGCTTC
TCTAACGGAATTCCGTGGGATTGCATTTGTTGGTGGATTTAGCTATGCAGATGTTCTTGA
CTCGGCGAAAGGCTGGGCTGCATCTATCAGGTTCAACCAGCCCCTCATACAGCAGTTCCA
GGAGTTCTACAATAGGCCAGACACCTTCAGCCTTGGGGTGTGCAATGGGTGTCA

Homology of Contig U35_22074 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66500.1	1420	0.0	protein\|phosphoribosylformylglycinamidine synthase, putative, expressed
Brachypodium v1_2	Bradi3g28650.1	740	0.0
Arabidopsis v10	AT1G74260.1	1407	7e-144	\| Symbols: PUR4 \| purine biosynthesis 4 \| chr1:27923005-27927764 REVERSE LENGTH=1407