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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_39302_PI390587928Hv_44K_v2TGAGCCTCTTTCTCACCTGATATACGCTGGCTCCGACTTTATTCTTGTTCCTTCAATCTT1457GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0760.2921.4412.5480.9900.947
Raw 23.850156.511639.8181840.304243.719252.100



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_57001.253662e-24709 - 76810060 / 60minus ABC10722 ABC44512
MLOCMLOC_57001.155102e-24765 - 82410060 / 60minus ABC10722 ABC44512
JLOC1JLOC1_36896.258278e-254985 - 504410060 / 60plus
JLOC1JLOC1_36896.155158e-254673 - 473210060 / 60plus
Harvest21ABC1530016223e-251458 - 151710060 / 60plus
Harvest35U35_2207916233e-251458 - 151710060 / 60plus



Contig Sequence (1623 bp)

>U35_22079 1623 Hv_44K_v2
CGAGGGAAAGGCTTCTGGGTGCAAGAGGAGCAAAACATCTATACAAGGCTTCTGCAAGAA
AGGAGAGAAAAGGAAGAAATTATGAGAAGAAAGGCTGAGAGAAGTGCAAATATGAAAGCT
GAGATGAAGGCAAAAACTATGCGAAGGTTTCTGCTTTCCCAGAAACACATTGTTTATACC
GAACCGCTTGAAGTACGTGCCGGAACCGCAGTGGATGTGCTGTACAATCCCTCTAACACA
GTGCTAAATGGAAAGACGGAGGTTTGGTTTAGATGCTCCTTTAACCTCTGGATGCATCCA
AGTGGGGCATTGCCACCTCAGAAGATGGTGAAATCGGGGGATGGATCGCTCTTAAAAGCA
ACAGTTAATGTTCCACCGGATGCCTATATGATGGACTTTGTTTTCTCCGAGTCGGATGAA
AATGGGATCTATGACAACAGGAATGGGATGGACTATCATATTCCTGTTTCTGATTCAATT
GAAACGGAGAATTACATGCGTATTATCCATATTGCCGTCGAGATGGCCCCTGTTGCAAAG
GTTGGAGGTCTCGGGGATGTTGTTACAAGTCTTTCACGTGCTGTTCAAGATCTAGGGCAT
ACTGTCGAGGTTATTCTTCCGAAGTACGACTGTTTGAACCAAAGCAGTGTGAAGGATTTA
CATTTATATCAAAGTTTTTCTTGGAGTGGCACAGAAATAAAAGTATGGGTTGGACAAGTC
GAAAACCTGACCGTTTACTTCCTGGAGCCTCAAAATGGGATGTTTGGCGTCGGATGTGTA
TATGGAAGGAATGATGACCGCAGATTTGGCTTCTTCTGTCATTCTGCTCTAGAGTTTATC
CTCCAGAATGGACTTTCTCCACATATAATACATTGCCATGATTGGTCAAGTGCTCCGGTC
GCCTGGCTATATAAGGAACACTATTCCCAATCCAGAATGGCAAGTACTCGGGTTGTATTT
ACCATCCACAATCTTGAATTTGGAGCACATTATATTGGTAAAGCAATGACATACTGTGAT
AAAGCCACAACTGTTTCTCCTACATATTCAAGGGAAGTGGCAGGCCATGGTGCCATCGCT
CCTCATCGTGAGAAATTCTACGGCATTCTCAATGGAATTGATCCAGATATCTGGGATCCG
TACACTGACAATTTTATACCGGTCCCTTATACTTATGAGAATGTTGTTGAAGGCAAGAGT
GCTGCAAAAAGGGCCTTGCAGCAGAAGTTTGGATTACAGCAAACTGATGTCCCTGTTGTC
GGAATCATCACCCGTCTGACAGCCCAGAAGGGAATCCACCTCATCAAGCACGCAATTCAC
CAAACTCTTGAAAGCAACGGACAGGTGGTTTTGCTTGGTTCAGCTCCAGATCATCGAATA
CAAGGCGATTTTTGCAGATTGGCCGATGCTCTTCATGGTGTTTACCATGGTAGGGTGAAG
CTTGTTCTAACCTACGATGAGCCTCTTTCTCACCTGATATACGCTGGCTCCGACTTTATT
CTTGTTCCTTCAATCTTCGAACCCTGTGGCTTAACACAACTTGTTGCCATGCGTTATGGA
TCGATCCCTATTGTTCGGAAAACTGGAGGGCTTCACGACACTGTCTTCGACGTAGACAAT
GAT



Homology of Contig U35_22079 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g53310.112170.0protein|soluble starch synthase 3, chloroplast precursor, putative, expressed
Brachypodium v1_2Bradi3g15027.117180.0
Arabidopsis v10AT1G11720.210940.0| Symbols: SS3 | starch synthase 3 | chr1:3951597-3956840 FORWARD LENGTH=1094