barSeed - Barley Seed Development Database

Probe CUST_392_PI415269222

Source Contig TA56301_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_392_PI415269222	Hv_44K_v2	ACATGCAACATTGCTGCCTACAGAACACTGATTTTTCATTAAGAACAGTGGCGCCTGAGC	667	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.715	2.810	1.606	0.470	0.099	0.089
Raw	123.206	334.045	157.411	71.764	4.216	3.797

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20338.1	1534	7e-23	1467 - 1527	98	60 / 61	plus	None
JLOC1	JLOC1_14093.1	1350	4e-23	1261 - 1321	98	60 / 61	plus
Harvest35	U35_27322	736	3e-25	659 - 718	100	60 / 60	plus

Contig Sequence (728 bp)

>TA56301_4513 728 Hv_44K_v2
GCACGAGGCTTCAGCCTCGTGGACGAGGACAGGAAGAGCATCCAGCCGGGCAACTTCGAG
CGCCACTGGGGCATCTTCTTCTACGACGGGAAGCCCAAGTACCAGCTCGGCCTCCGCGGC
AGTGGCGGCGGCATGCTTGTGCCGGCGAGGGGCGTCGAGTACCTCCAGAGGCGGTGGTGC
GTGCTCAAGCCCGGCGCCGACCTCGCCGACCAGAAGGTCGGCGACAGCGTGAGCTACGCC
TGTGGTAGTGCCGACTGCACCAGCCTCGGGTACAAGACCTCGTGCGGCGGCCTCGACGCC
AAGGGCAACGTGTCCTACGCGTTCAACAGCTACTACCAGACCGAGGACCAGGACGACCGG
GCCTGCGACTTCCGCGGACTCGCCACCACCACCACCGTCGACCCCTCCAGCGGGACGTGC
CGGTTCATCGTCGGGATCGCGCCGACCAGCACGGGCACGGCGACGAGGAACGTCGGGGCC
AGGACCGCGGCCGTCCTCTTCGCGCTGTTGCTCGCGGGCGTGTTCTGAATTCAGGATTGT
GGTCGGTGCTTCATTAGTTTTAGTTGTCATCTTTCAGCTTATCTTTTTTTCTAGGCAGAG
ATAGCTGTTCATCTTTGTTGTCGATTTTCCTTGTCGTCTGTCCGTTCTGTGGTTTCCAGA
CCAGAATACATGCAACATTGCTGCCTACAGAACACTGATTTTTCATTAAGAACAGTGGCG
CCTGAGCC

Homology of Contig TA56301_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g12800.1	495	3e-84	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g18220.1	486	1e-87
Arabidopsis v10	AT4G31140.1	484	1e-56	O-Glycosyl hydrolases family 17 protein \| chr4:15141581-15143188 FORWARD LENGTH=484