barSeed - Barley Seed Development Database

Probe CUST_39290_PI390587928

Source Contig U35_22081

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39290_PI390587928	Hv_44K_v2	CTATTTACTTGAGGTGTAGTATAGTGTGTTGGTACTAGTAAACATCAAGGTTTCGCTATC	586	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.511	5.267	1.396	0.778	0.210	0.292
Raw	122.754	429.940	92.448	83.927	7.112	10.766

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11261.1	2890	2e-24	855 - 914	100	60 / 60	minus	ABC17190
JLOC1	JLOC1_7444.6	12121	8e-25	11907 - 11966	100	60 / 60	plus
JLOC1	JLOC1_7444.5	12034	8e-25	11820 - 11879	100	60 / 60	plus
JLOC1	JLOC1_7444.4	11453	8e-25	11239 - 11298	100	60 / 60	plus
JLOC1	JLOC1_7444.3	11495	8e-25	11281 - 11340	100	60 / 60	plus
JLOC1	JLOC1_7444.2	10619	8e-25	10405 - 10464	100	60 / 60	plus
JLOC1	JLOC1_7444.1	11453	8e-25	11239 - 11298	100	60 / 60	plus
Harvest21	ABC17190	631	3e-25	103 - 162	100	60 / 60	minus	ABC17190
Harvest35	U35_22081	748	3e-25	587 - 646	100	60 / 60	plus

Contig Sequence (748 bp)

>U35_22081 748 Hv_44K_v2
GCAGAATTCAGCATAATTGAAGAACAAAGTCCAAAGAAAGATGAATCAAATATGGCAGGA
GAGAAAACTTCTGATGAGAAGACAAAGGATGTACAGGAAGCTAAGAGTTTCACTGATGAA
GCGAAAGCCAAAATTGAAGAACAAGGAGCAGTACAAAAGGCATCACACAATCAGAAACAT
AATCTCGATGTGATTTCACCAACAGAAGCTCCTGAGAGTGAAGAAAAATCTGTGGATATA
AAAGAGCCAGAGTTCAGCACAGATGAAGAACAAAGTCCAAAGAAAGATGTATCAAACATT
GCAGAAGAGAAGAGTTATGACAAAAAGACAAATGGTGACGAGGAAGCTAAGAATTTCGCT
GATGACACACCAATGAAAATTGAAGAACGGGAGGCAGGGCAGAAGTCATCGCCTAAAAAG
CATAATATCTTATCTGGTGTCGGATCAAAGGTAAAGCACCAACTAGCAAAAGTGAAGAAA
GCTATCATAGGCAAGCCTGGACACACAAAATCTGAATTACCAAAAGCTTGATACTGCATT
CACCTTAGAGTGTGTATATTTTTGTTGCTATTTGTACATTTGTATGCTATTTACTTGAGG
TGTAGTATAGTGTGTTGGTACTAGTAAACATCAAGGTTTCGCTATCGCCATTGCATTGAA
ATGTTGTGTGACTGAAGAACGATTTGTAAATACAGATAGTGTGTAAATCAAGGTTTGATA
ATTGTTTGAGTTTGGGGCAAAAAAAAAA

Homology of Contig U35_22081 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g02910.1	2964	1e-76
Arabidopsis v10	None