- Probe CUST_3928_PI390587928
- Source Contig U35_37377
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3928_PI390587928 | Hv_44K_v2 | GTTTCTATGATAAATTAAGCCGTGTACCACAGGTGGAGAAAGTATCAGTTTAAATATGCT | 35 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.297 | 1.494 | 1.144 | 1.080 | 0.567 | 0.577 |
| Raw | 207.336 | 381.397 | 252.127 | 374.757 | 67.775 | 74.807 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_10910.1 | 543 | 3e-21 | 82 - 141 | 97 | 58 / 60 | plus | None |
| JLOC1 | JLOC1_7178.1 | 356 | 2e-21 | 85 - 144 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC17210 | 462 | 6e-22 | 227 - 286 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_37377 | 258 | 3e-25 | 36 - 95 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_1016 | 608 | 6e-22 | 373 - 432 | 97 | 58 / 60 | plus |
Contig Sequence (258 bp)
>U35_37377 258 Hv_44K_v2 TTCTTATTTTTTTTTTTTTCAATTTTGTATTTTAAAGCATATTTAAACTGATACTTTCTC CACCTGTGGTACACGGCTTAATTTATCATAGAAACTATTCAAACATTATACGAGGTATTC CACGTTTAATTTATCCCGAGTGTAAAACTTGCCAAATAAAACAGGTTATGCTCTAATATC CTTTGGCTGGCTTGCATGTTAAAAAGATTTTTCTTCTCTTCCGAATCACTCGCTGGACTC TCCAATTAGCTGTCCTTC
Homology of Contig U35_37377 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |