barSeed - Barley Seed Development Database

Probe CUST_39287_PI390587928

Source Contig U35_22084

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39287_PI390587928	Hv_44K_v2	ATTGACTTATAACGTTGTACTAAATCTTCAGAATTCACAACTACGCGCAAAGGAGCTTTT	1072	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.273	3.128	0.832	0.424	0.942	0.839
Raw	40.011	35.537	8.461	4.252	2.940	3.201

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11560.1	2046	7e-23	1982 - 2042	98	60 / 61	plus	ABC15379
MLOC	MLOC_11560.2	1285	7e-23	4 - 64	98	60 / 61	minus	ABC15379
MLOC	MLOC_11560.3	1141	7e-23	4 - 64	98	60 / 61	minus	ABC15379
JLOC1	JLOC1_7664.2	2390	4e-23	2168 - 2228	98	60 / 61	plus
JLOC1	JLOC1_7664.1	2373	4e-23	2151 - 2211	98	60 / 61	plus
Harvest21	ABC15379	1132	3e-25	1073 - 1132	100	60 / 60	plus	ABC15379
Harvest35	U35_22084	1132	3e-25	1073 - 1132	100	60 / 60	plus

Contig Sequence (1132 bp)

>U35_22084 1132 Hv_44K_v2
GTTGGGCTTTATCACGTATCATAAGTTGCCGCATTCGTACGACTTCCACAAATACATGGT
ACGGAGCATGGAAGATGATTACAATGGAAGTGTTGGTATCAGTTGGCCACTTTGGGTTTA
TGCAATAATATGCATCTTTGTGAATGTTCATGGTCTTAATATATATTTCTGGCTATCATT
TGCCCCTGTCATTCTCGTCCTGCTTGTGGGCACTGAGCTGCAGCATGTTATCGCTCAGTT
GGCACTGGAGGTTGTTGAGGCAACAGCCACAAATGTCGGAACGCAACTGAAACTGCGGGA
TGATCTCTTCTGGTTTGGAAAACCTCGGGTTCTGTGGTGGCTTATACAGTTCATCTCGTT
CCAGAATGCCTTTGAGATGGCGACATTCTTATGGTCTCTGTGGGAACTGAGTGCAAATTC
TTGCTTCATGAAGAACCAGTACATGGTGGTTATTCGCTTGGCTTCTGGGTTGCTTGTTCA
AGTTTGGTGCAGCTACAGTACGCTGCCTCTTAACGTGATTATCTCCCAGATGGGTTCCAA
GTTCAAGAAGTCACTGGTCTCCGAGAGCGTGAGGGACTCCCTCCACAGCTGGTGCAAGAG
GATCAAAGAGAGGAGGCACAATCCGCTCTTCATGCGGAACGGGACACTCACGTCGAGGTC
GGTCTGCTCCCTCGACACGACCATCTATGAGACCGACCACGAGACCAACACGGTGTGCAC
GCTGTCAAGGACTGTGTCGGCATCGTCCCTGGACGAGGCACTGACCGCGATCACTGTCGA
TGACGAGGAGGAGATCTCTCACATCGAGGAAGATACCCGACACACTTAGTTACTCAGATT
AGCCCTGTTCTTCACCGGACTAAATATGCACAGCTAAAACTCTACTGAACTTGAAGAACA
GTGTCCATTCCTGCCTAAGCTTCATAGTAACTGCAGAAAAGGACCTGCGGATTACCCAGT
ATATATGTGTGTAACTGCAAGTGATTGCTCCTCATGTCTCATGGCCACTCTGTGCAAAGT
AATGTTGTGTCCATAGGACGCCTCCACTTCAAGATGATACTATCATCTTTGTATTGACTT
ATAACGTTGTACTAAATCTTCAGAATTCACAACTACGCGCAAAGGAGCTTTT

Homology of Contig U35_22084 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g07912.1	516	9e-152	protein\|MLO domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g23887.1	514	5e-176
Arabidopsis v10	AT1G11000.1	573	6e-105	\| Symbols: MLO4, ATMLO4 \| Seven transmembrane MLO family protein \| chr1:3671935-3675909 REVERSE LENGTH=573