barSeed - Barley Seed Development Database

Probe CUST_39286_PI390587928

Source Contig U35_22085

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39286_PI390587928	Hv_44K_v2	GAAGACAGATTTGATCTTGTGAGATTTGTGAAGCTGGTTGCTGCTGAAGGCCTATTTTTT	433	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.447	1.248	1.302	0.761	0.508	0.410
Raw	56.698	66.463	68.496	58.310	15.156	12.817

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252929.1	3034	2e-24	445 - 504	100	60 / 60	plus	ABC12244
MLOC	MLOC_63961.1	861	2e-24	574 - 633	100	60 / 60	plus	None
JLOC1	JLOC1_41950.1	874	8e-25	587 - 646	100	60 / 60	plus
Harvest35	U35_22085	547	3e-25	434 - 493	100	60 / 60	plus

Contig Sequence (547 bp)

>U35_22085 547 Hv_44K_v2
AAAAAACAAAACTATTTCCAAAATAAAAGGAAAAACCTCGCTTCATCCGTCGCTCTGTTT
CTCTACTCTGCTTCTGGCCATGGCCGCCTCGCCGCCGCCCTCGCGATTCGGCCCCCCCTT
CCCCCTCTTCCTCCTCCTCGTCGTCGCCGGTTACTTCACCGCCTCAGCATTAGCGGCGGG
GGAGCTGAGCCAGGTGGTGGGGAGGGGGACGGATGGCCCCTACTTCGAGCCGTTCAACGT
GAGCTACGATCATCGCGCGGTGCGCATCGGCGGGCAGCGGAGGATGCTCGTCTCAGCGGG
AGTGCACTACCCCCGCGCCACACCCGAGATGTGGCCTAGTATAATTGCAAAGTGCAAGGA
AGGTGGTGCAGATGTAATTGAGACATATGTCTTTTGGAATGGGCATGAACCAGCCAAAGG
TCAGTATTATTTCGAAGACAGATTTGATCTTGTGAGATTTGTGAAGCTGGTTGCTGCTGA
AGGCCTATTTTTTTTCCTTCGTATCGGGCCATATGCTTGTGCTGAATGGAATTTCGGTGG
TTTCCCA

Homology of Contig U35_22085 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g24170.1	928	4e-68	protein\|beta-galactosidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g07990.2	749	8e-82
Arabidopsis v10	AT2G32810.1	887	5e-58	\| Symbols: BGAL9 \| beta galactosidase 9 \| chr2:13919410-13925325 REVERSE LENGTH=887