barSeed - Barley Seed Development Database

Probe CUST_39280_PI390587928

Source Contig U35_34063

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39280_PI390587928	Hv_44K_v2	ATTTCTCCCTCGACTAAGGGGCCGAATTATTTTCGTACGAAAGAATAAGACGGCGTGACA	70	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366255	1804	7e-23	1476 - 1535	98	59 / 60	minus	ABC12885
MLOC	MLOC_62654.3	1488	7e-23	1335 - 1394	98	59 / 60	minus	ABC12885
MLOC	MLOC_62654.5	1599	7e-23	1373 - 1432	98	59 / 60	minus	ABC12885
MLOC	MLOC_62654.1	1330	7e-23	1104 - 1163	98	59 / 60	minus	ABC12885
MLOC	MLOC_62654.4	1566	7e-23	1302 - 1361	98	59 / 60	minus	ABC12885
MLOC	MLOC_62654.2	1608	7e-23	1361 - 1420	98	59 / 60	minus	ABC12885
JLOC1	JLOC1_41021.4	1520	4e-23	1229 - 1288	98	59 / 60	minus
JLOC1	JLOC1_41021.3	1595	4e-23	1304 - 1363	98	59 / 60	minus
JLOC1	JLOC1_41021.2	1533	4e-23	1242 - 1301	98	59 / 60	minus
JLOC1	JLOC1_41021.1	1656	4e-23	1365 - 1424	98	59 / 60	minus
Harvest21	ABC12885	1603	1e-23	1398 - 1457	98	59 / 60	minus	ABC12885
Harvest35	U35_34063	225	3e-25	71 - 130	100	60 / 60	minus
Harvest35	U35_20459	1603	1e-23	1398 - 1457	98	59 / 60	minus

Contig Sequence (225 bp)

>U35_34063 225 Hv_44K_v2
ACTCCTATAGGGCGAATTGGGCCCTCCAGATGATGCTCGAGCGGCCGCTACAGCGCTCGT
CGGTCGAAGGTGTCACGCCGTCTTATTCTTTCGTACGAAAATAATTCGGCCCCTTAGTCG
AGGGAGAAATATGTTTTCTTTTCCTCTATTTTCCTCTTTTTTTTTTTCATGAACTGTACA
GTGTTAGGAGGAGCTGTTTGATTTGCCGCCACGAAATTTTCGGCC

Homology of Contig U35_34063 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None