- Probe CUST_39274_PI390587928
- Source Contig U35_46042
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39274_PI390587928 | Hv_44K_v2 | AATCTATTCAAGGATTGTCTCGCTCTATGCTGAGCAGAATGAACTCCAATTTGCTGTGCC | 314 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.956 | 1.335 | 2.261 | 1.853 | 0.624 | 0.579 |
| Raw | 345.426 | 756.083 | 1112.352 | 1471.969 | 171.600 | 173.570 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK366048 | 1914 | 2e-24 | 1112 - 1171 | 100 | 60 / 60 | plus | ABC05892 ABC05893 |
| MLOC | MLOC_66505.2 | 1899 | 7e-23 | 1092 - 1151 | 98 | 59 / 60 | plus | ABC05892 ABC05893 |
| MLOC | MLOC_66505.1 | 1965 | 7e-23 | 1172 - 1231 | 98 | 59 / 60 | plus | ABC05892 ABC05893 |
| JLOC1 | JLOC1_43831.1 | 2157 | 4e-23 | 1250 - 1309 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC45577 | 543 | 3e-25 | 315 - 374 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05893 | 1687 | 3e-25 | 943 - 1002 | 100 | 60 / 60 | plus | ABC05893 |
| Harvest21 | ABC05892 | 1911 | 1e-23 | 1105 - 1164 | 98 | 59 / 60 | plus | ABC05892 |
| Harvest35 | U35_46042 | 543 | 3e-25 | 315 - 374 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14052 | 1828 | 3e-25 | 1008 - 1067 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14022 | 1889 | 1e-23 | 1105 - 1164 | 98 | 59 / 60 | plus |
Contig Sequence (543 bp)
>U35_46042 543 Hv_44K_v2 TTTGTTGATTGCCCGGGCCACGACATTCTCATGGCTACAATGCTTAATGGAGCAGCTATC ATGGATGGAGCCTTGCTTTTGATAGCAGCAAATGAAAGCTGCCCACAACCCCAGACGTCT GAGCATCTTGCAGCTGTTGAAATCATGCGTGTGCAGCATCTCATTATTTTGCAGAATAAG ATTGATCTTATCCAGGAAAGTGCAGCAATGAACCAGCATGAAGCAATCCAAAAGTTTATC CAGGGCACGATAGCTGAAGGTGCTCCTGTGGTGCCAATATCTGCCCAGCTGAAGTACAAC ATCAAATGCACCCCAATCTATTCAAGGATTGTCTCGCTCTATGCTGAGCAGAATGAACTC CAATTTGCTGTGCCAGGAGGGCTTATCGGTGTGGGAACCACCATGGATCCAACTTTGACT CGTGCCGACAGGCTGGTTGGCCAGGTTCTAGGAGAAATCGGGTCGCTTCCCGATGTTTTC GTGGAGCTGGAGATCAACTTCTTCCTTCTCCGAAGGCTGCTGGGTGTGAGAACAAAGGGC ACA
Homology of Contig U35_46042 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g41400.1 | 465 | 4e-60 | protein|eukaryotic translation initiation factor 2 subunit gamma, putative, expressed |
| Brachypodium v1_2 | Bradi5g09350.1 | 329 | 1e-88 | |
| Arabidopsis v10 | AT1G04170.1 | 465 | 6e-54 | | Symbols: EIF2 GAMMA | eukaryotic translation initiation factor 2 gamma subunit | chr1:1097423-1099702 FORWARD LENGTH=465 |