- Probe CUST_39272_PI390587928
- Source Contig U35_46044
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39272_PI390587928 | Hv_44K_v2 | CATACAACAAATATAGGAAGAATTCAGGTTCTTGAGATTATAGTGTTGTCACTTGTCAGC | 155 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.303 | 2.179 | 1.180 | 0.781 | 0.963 | 0.858 |
| Raw | 16.727 | 25.337 | 12.206 | 11.010 | 3.451 | 3.492 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_6972.2 | 4933 | 2e-24 | 2713 - 2772 | 100 | 60 / 60 | minus | ABC09447 ABC45584 |
| MLOC | MLOC_6972.1 | 5328 | 2e-24 | 3092 - 3151 | 100 | 60 / 60 | minus | ABC09447 ABC45584 |
| MLOC | MLOC_6972.3 | 3735 | 2e-24 | 126 - 185 | 100 | 60 / 60 | minus | ABC09447 ABC45584 |
| MLOC | MLOC_6971.2 | 5487 | 2e-24 | 3103 - 3162 | 100 | 60 / 60 | minus | ABC09447 ABC45584 |
| MLOC | AK371060 | 2389 | 7e-23 | 2179 - 2238 | 98 | 59 / 60 | plus | ABC09447 ABC45584 |
| JLOC1 | JLOC1_4590.3 | 6064 | 8e-25 | 2508 - 2567 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4590.2 | 5710 | 8e-25 | 2154 - 2213 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4590.1 | 5719 | 8e-25 | 2163 - 2222 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4589.1 | 5490 | 8e-25 | 3133 - 3192 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC45584 | 586 | 3e-25 | 156 - 215 | 100 | 60 / 60 | minus | ABC45584 |
| Harvest21 | ABC09447 | 1651 | 1e-23 | 1298 - 1357 | 98 | 59 / 60 | minus | ABC09447 |
| Harvest35 | U35_46044 | 586 | 3e-25 | 156 - 215 | 100 | 60 / 60 | minus |
Contig Sequence (586 bp)
>U35_46044 586 Hv_44K_v2 TTTTTTTTTTTTTTTTTATCAAAAATGGTAGAAAAAAAGGCTTTTATTTACCTTACAGAG TAATCTTGTGAAAATTACAACAGCTTGATGTACAACATTTCGAAAACCATACATACACAC ATATGCCCTACAGATAAATTCGTTGAAGTAATTTAGCTGACAAGTGACAACACTATAATC TCAAGAACCTGAATTCTTCCTATATTTGTTGTATGTGCTATAAAATATATCTTATCTTGA AGGTAATATATAAGCTCAATCTTATCTTCAAGGTAGGCTGTGGCGTGAATTCAACGAGCT ATAATCAGATCTCAAGAACCTGAATTCTTCACGGGCTATATTTGTTGTATGTGCTATAAA ATATATCTTATCTTGAAGGTAAAGTATAAGCTCAATCTTATCTTCAAGGTAGGCTGTGCC GTGAATTCAATGAGCTATAATCAGAGCTAGGTCGCCTTTTGACCCGTTTAGTTGATTCCA AAAGTCCAACAAGAGACGGGAGAGGATGCGGGACAGGGACATTCCTCGATCTGTACAGCC TCTTCAGACTTGCATGCAAAGATTTCGATGATCCAATGACACACAG
Homology of Contig U35_46044 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |