barSeed - Barley Seed Development Database

Probe CUST_3926_PI390587928

Source Contig U35_37379

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3926_PI390587928	Hv_44K_v2	CGTACCATATTACAAGTATACAGCACCAAAGTGGACGCTGATGCTGACTGAGACGAGAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68842.5	4749	3e-22	2956 - 3014	98	58 / 59	plus	ABC07644
MLOC	MLOC_68842.3	1994	3e-22	1904 - 1962	98	58 / 59	plus	ABC07644
MLOC	MLOC_68842.2	1920	3e-21	1864 - 1920	98	56 / 57	plus	ABC07644
JLOC1	JLOC1_45587.1	2113	1e-22	1864 - 1922	98	58 / 59	plus
Harvest35	U35_37379	614	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (614 bp)

>U35_37379 614 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTCGTCTCAGTCAGCATCAGCGTCCACTTTGGTGCTGTATACT
TGTAATATGGTACGTTTGAAGTAGTGGCATTGTGACAACAGACTGAACAATGGTTCTTTT
TCATAACCAAGTGTAAATCTCACGAAGTGAAGGGAAAAGATAAAAACCTAAGAATTACAA
ACCTGCAGAAGCAGGTCGTGAGTCATCACTCATCACACACATCAGTTCTCTGCAATGGGA
AATACTGACCCAATCTTGTTGTTACCCATACGGTAGCACTTGACGTTCACTGTATACGGG
CCAATATCGACACGGTTATCCTCCCCTCCCATAAAGAAGCACAGTGTGTAGAGTGCCAGC
TCGAACTCAGGGCTAACACCAATCAAAGAGCTTGATACTGATTTCAGCACACCATGCCAC
TCAAATTGAACGGTCAGTAACTGTGTCTCCGAATCAGGTGATTCCCCACGCCGTCTTGGG
AATATGTAACCTTGGTAGTCGACATTTCCCTTGGCTTCTTCCAGATAAAACTGAATCCAG
TTATGGAATCCTGAGAACTCGGTCTCTCCTTGTCTCTGTTCCTTTATCTCACCAACAAAC
ACATGCTCAAATGC

Homology of Contig U35_37379 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45910.1	520	1e-77	protein\|placental protein 11 precursor, putative, expressed
Brachypodium v1_2	Bradi5g17240.1	466	8e-85
Arabidopsis v10	AT4G17100.2	437	6e-71	EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998). \| chr4:9610164-9612513 REVERSE LENGTH=437