barSeed - Barley Seed Development Database

Probe CUST_39264_PI390587928

Source Contig U35_22092

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39264_PI390587928	Hv_44K_v2	TTAAGCATGTATGTGAAAACTGGCGAATGAGGCTGCAAGCAACAATGTCCCCCCATGTAT	607	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.232	0.283	1.032	1.956	1.077	1.445
Raw	15.575	30.740	95.276	293.868	55.119	80.652

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370751	3926	2e-24	2833 - 2892	100	60 / 60	plus	None
Harvest21	ABC33172	482	3e-25	272 - 331	100	60 / 60	plus
Harvest35	U35_22092	1246	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (1246 bp)

>U35_22092 1246 Hv_44K_v2
GAAGAAACTTCATACAGTGTTGTGCATTGATGATGAGCAGTTTAAGAATGAGCTTAATAT
TCTAATGAGGGTCAAACACAAAAATATCATACAGTTAGCTGGCTACTGCCACCATACATC
ACAGATAGTTGCCAAATACAAAGGAGAATATGTTTCTGCTAGTGTGGTAGAAAGAGCGAT
TTGTTTGGAATACATGCACGGTGGAAGCCTTGCCGATCAACTTTCTGCTGAAGCTTGCAC
ACTTGATTGGGACAAATGCTACAAAATAATAAAAGAAATTTGTGAGGGTTTACATTACCT
TCATAATCTTGATGCTCCCATTTTCCATATGGACTTAAAACCTGCAAATGTTTTGTTGGA
TAAGGATATGGTAGCAAAACTTTGTGATTTTGGTTTGTCAAGATTATTTGATTCGATGCA
AACCTATATAACAGAATCCCAAGATATGAAAGGAACACGTGCAGTGGATATATGCCACCA
GAATACATCAACAGACAACAAATCAGTCAGAAGTTTGACGTATTCAGTCTCGGGGTCATA
ATCATACAAATAATGGCAGGAAAGGATGGCTACTTCAATTGTGCAGACACCCCTCCAAAA
GAATTTATTAAGCATGTATGTGAAAACTGGCGAATGAGGCTGCAAGCAACAATGTCCCCC
CATGTATCTGAAGAAGTGAGGACATGCATCAAAATAGCATTAAAATGTGTGGAGGACGAC
CGAACCCGAAGGCCTACAATAGCCCAGATTGTCAATGAACTAAGTAACATTGGTATTCCT
AAAAGTAAACCGATACGTCAGTGGGCAAACAAGCTGACTTCGTTGAAGACCTTCCGCACT
TGAAGCATTGGCTGTTCGTCTTAGTTGCAGCAATTGCCATATTTTTGCATGGCCTCAATA
CTCAATGTTTGCAAATCGATGCATCATATGGACGCATCATAGCCAAACATGATTGCTTAC
ATCAACACACAAGTCCGTTGGCTTCAATTAATGTGCGCAAATCTTCGAAGTCTATAGATT
CATGGTGCCGAGATATTACAAGCAGAACACGCACATCAGTGCTTGAAGTACATACTCAAT
GCCTTCATCTAGGCACCCTCAAAAGGCAACAACAGAGAGAATGGTTTGTAAACGAGTGTT
AGTGATTTCTATATCAGTTTCTGCTGGGAAGAAAGCAAATGGCTATTTTCAGAACCAATA
GAGTGCTAGGGGTATCTAAACGCTTTCACAAAAAAAAAAAAAAAAA

Homology of Contig U35_22092 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g39450.1	457	2e-69	protein\|cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed
Brachypodium v1_2	Bradi4g09457.1	334	7e-77
Arabidopsis v10	None