barSeed - Barley Seed Development Database

Probe CUST_39262_PI390587928

Source Contig U35_22095

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39262_PI390587928	Hv_44K_v2	ACCTATGTATCTTATTGTACTGTGGGTGCCATAATGCAACTGTCATGCCCAAACATCAAC	609	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78825.6	3950	2e-24	2185 - 2244	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.13	2057	2e-24	288 - 347	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.5	2283	2e-24	512 - 571	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.4	2134	2e-24	482 - 541	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.1	2296	2e-24	541 - 600	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.11	2830	2e-24	1168 - 1227	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.12	2901	2e-24	1239 - 1298	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.3	2067	2e-24	399 - 458	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.9	1814	2e-24	151 - 210	100	60 / 60	minus	ABC16451 ABC37642
JLOC1	JLOC1_52529.5	1836	8e-25	1610 - 1669	100	60 / 60	plus
JLOC1	JLOC1_52529.4	1844	8e-25	1610 - 1669	100	60 / 60	plus
JLOC1	JLOC1_52529.1	2035	8e-25	1610 - 1669	100	60 / 60	plus
Harvest21	ABC16451	694	3e-25	26 - 85	100	60 / 60	minus	ABC16451
Harvest35	U35_39443	432	3e-25	352 - 411	100	60 / 60	plus
Harvest35	U35_22095	694	3e-25	610 - 669	100	60 / 60	plus

Contig Sequence (694 bp)

>U35_22095 694 Hv_44K_v2
ACAAGGCAGGTTTCCGCGTCACAGCACTGCATGGAGGGAAGTCACAAGACCAGAGGGAGA
TTAGCCTTGATGGATTTAGGAACCGCAGGTTCAATGTTCTTGTGGCGACTGATGTTGCAG
GGCGTGGTATTGATATTCCTGATGTCGCTCATGTTATTAACTATGAGATGCCTAGTTCAG
TTGATACATACACACATCGCATCGGAAGAACAGGGCGTGCAGGAAAGAAGGGACTCGCGA
CTTCATTCTTAACTCTGGATAACACTGATATTTTCTTCGATCTGAAACAGATGCTTACTC
AGAGCAATAGTCCCGTCCCTCCAGAACTTGCCAGGCATGAGGCGTCAAAGTTTAAGCCAG
GATCGGTTCCCGATAGACCTCCAAGAAGAAATGACACCGTCTATGCATCTCACTGAAGCA
ATCTGCTGCAGAAGAAGCAGAGATCCTTCTTGGGTACAATTCAGGGCAACTTCTACTGTG
TCGAGATTAGTACTTACGAGGTACAAACATCATAACAATTGAACCGTTATCTTTTCCTGT
TTGCAAACCAGCTTTTCTACCTCTGTAACCTAAGTATATTTGAATATTTCTGTGATGATT
CAGAACTGGACCTATGTATCTTATTGTACTGTGGGTGCCATAATGCAACTGTCATGCCCA
AACATCAACTGCTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22095 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50090.1	737	2e-83	protein\|transposon protein, putative, CACTA, En/Spm sub-class, expressed
Brachypodium v1_2	Bradi1g11180.1	735	4e-87
Arabidopsis v10	AT2G33730.1	733	7e-70	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:14265679-14267880 REVERSE LENGTH=733