barSeed - Barley Seed Development Database

Probe CUST_39260_PI390587928

Source Contig U35_22097

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39260_PI390587928	Hv_44K_v2	ACATTTTTGTCATCTGCGCGCTTCTCCGATCAATGGATGCAACATTTTTCGTCTAAAAAA	996	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.864	4.499	4.003	1.331	0.456	0.311
Raw	16.173	144.039	110.222	57.424	6.393	3.110

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363449	1267	7e-23	998 - 1054	100	57 / 57	plus	ABC20580
Harvest35	U35_22097	1067	3e-25	997 - 1056	100	60 / 60	plus

Contig Sequence (1067 bp)

>U35_22097 1067 Hv_44K_v2
AAGCTCAACCGTTAGCGGATTAGCGCCATGGCACTTTGCAGAGCGCGCAGCGGGCTGCTG
CTTGTCGCCATGGCTCTGCTCCCGCTTGGCATGGCCATGGACGCCATTGGCAGTAACTGC
GCCGGAACCAGGTACGCTGCTGGCAGTGGCATGGGCAACATCGATTCCGTCCTGGCGGAC
CTCGTCGCCAAGGGCTCCTCGGGAGGCTTCGCCACGTCCATCGCCGGCAAGGGTAACAGC
ACCGTCGTCTATGGCCTCGCGCAATGCCGCGGCGACGTCTCCGCCAGCGACTGCTCCGCC
TGCCTCGTGGACGCCGCCAAGCAGCTCCCCGCCGCCTGCAGCTACCTATCCGACGCTATA
ATATGGTACGACTTCTGCTTCATGCGGTACGACAACACAGACTTCGTCGGACACTCGGAC
ACGGGCGCCGGCGTGATCCTGGTGAACGTGCAGGCGGCGGACGACCCCAAGCCGTTCAAG
ACGGCGGTGGGGAAGGTGATGAACAAGGCGACGGCGAAATCGTCAGCGTCGGGCAGCGCG
GGGCTCGGCAGGTCCAAGTACCAGTACACGCCGTTCGTCACCATCTACGGCCTGGCGCAG
TGCACGCGGGACCTCGCGCCGCTGGCGTGCGCGCAGTGCGTCTCGGTGGCGCTGTCCAAG
TTCGGCGACTACTGCGGCGCGCAGCAGGGCTGCCAGATCAACTACAGCAGCTGCAGGGTG
CGCTACGAGATCTACCCGTTCTACTTCCCGCTCGACGGCGCCGCCAATGGACGCGCCACC
ACCGATATGACAAAATACACCAAGATCGTCGTGCACGCTTGACCTTGACGTACAGGCTCC
TTGCACATTTCCGATGTGCTTCATGCAAGAAACGCACTAGATGCAAGTGAGACCTGATAT
TTGAGCCGGATGCACTTAATAAGCGGGAATCGTTTCCCACCGGCGCGCCCGCAAACCGAC
GCGCCGGTCGCCTCCTGGCGCGCGCGGGCCCTTGCAACATTTTTGTCATCTGCGCGCTTC
TCCGATCAATGGATGCAACATTTTTCGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22097 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16950.1	266	5e-103	protein\|cysteine-rich repeat secretory protein 55 precursor, putative, expressed
Brachypodium v1_2	Bradi1g66450.1	275	4e-94
Arabidopsis v10	AT5G48540.1	263	6e-59	receptor-like protein kinase-related family protein \| chr5:19669096-19669887 REVERSE LENGTH=263