barSeed - Barley Seed Development Database

Probe CUST_39259_PI390587928

Source Contig U35_22098

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39259_PI390587928	Hv_44K_v2	ACCCGATTGTTTTGTTCTGTTTGTCACCACGCACGAACGTGAGGTGATACCGTGAAAAAA	1400	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.587	2.912	1.060	0.853	0.562	0.743
Raw	1234.272	504.795	161.053	218.487	46.413	68.078

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67949.1	2954	9e-22	595 - 649	100	55 / 55	minus	ABC15716
JLOC1	JLOC1_44915.1	2479	5e-22	424 - 478	100	55 / 55	minus
Harvest21	ABC15716	1471	3e-25	1401 - 1460	100	60 / 60	plus	ABC15716
Harvest35	U35_22098	1471	3e-25	1401 - 1460	100	60 / 60	plus

Contig Sequence (1471 bp)

>U35_22098 1471 Hv_44K_v2
CCGACGGCTACCCTCGTCCAGACCGGTGGGTGGAACGACGGATACCGCAACGTGCGCGCC
ATGCGCGCGTGCGCCGGCGGGGACGACGACGGCGGCGGCTGCGACTGGAACGAGACGCAG
GACGCGCTCGCCGTGAACCGGTGGTACGCCACCAACCAGATCCTCCCCGACGGCCGCGCC
TTCATCGTCGGCGGCCGCCGGCAGTTCAACTACGAGTTCTTCCCCAAGGCCGATGCTTCC
GACGCCTCGGCCATCGCATTGCCGTTCCTGGTTCAGACCAGGGACCCCGAGGAGAACAAT
CTGTACCCTTTCGTGCACCTGAACATCGACGGCAACCTTTTCATCTTTGCCAAGAACCGC
GCCGTGCTTCTCGACTACAGGGAGAACAAGATCGTCCGGACGTACCCTGAGCTGGCCGGC
GGCGACCCCAGGAACTACCCCAGCTCGGGCTCGTCGGTGCTGCTGCCCCTGAAGCCGTCG
CCCACCGAGGCCGAGGTGCTGGTCTGCGGCGGCGCGCCAGCCGGCTCCTACAACTCGACC
AAGGAGAAGACCTTCTTCCCGGCGCTGGTGACGTGCGGGCGGATCAAGATCACGGACGCT
TCGCCGGCGTGGGTGATCGAGAGAATGCCGTCGCCGCGGGTGATGGGGGACATGATCCTG
CTGCCAAACGGCGCCGAGGTGGCCATCATCAACGGCGCCATGGACGGCAGCGCCGGGTGG
GAGGCCGCCAACACCCCGGCCTACGCGCCCGTCATGTACCGGCCCGACCACGCGCCCGGA
GACCGGTTCGAGGAGCAGAGCTCGACCGACATCCCGCGGCTGTACCACTCGTCAGCGATC
CTCCTCCGGGACGGCCGGCTGCTGGTCGGCGGCAGCAACCCGCACATCTACTACAACTTC
AGCAACGTGCAGTACCCGACAGAGCTCAGCCTGGAGGCCTTCTCCCCGGAGTACCTGGAC
AGCTCCAACGACGTCCTCCGTCCAAAGATCACCGACCCCTCGCCTGCCGGCCCGCCCGTG
AGCGTGAAGTACGGGGACTCGATGACCCTGCAGTTCGAGGTGCCAGCGGCGGCACCGGCG
AGAAGGAGACGGGGCGACGGCGGGGGCGGTGCTCTCGGCCTCGGCCTCGTGTCGGTGACG
ATGGTGGCGCCGTCGTTCACGACGCACTCGTTCGGGATGAACCAGAGGCTGCTGCTCCTG
GACGTGGCGGGGACGACGGCGTTGCACCGCGCGGCGGGCGCGTACGAGGCGTCGGTGGCG
ATGCCGGCGACGGCCGTCCTGGCGCCGCCGGGGTACTACATGGTGTTCGTGGTGAACGGG
CACATCCCCAGCGAGGGGGTGTGGGTCCACATAGAGTGAGTGACGGCCACGGCGGCATGC
ATCATGTATAGCACGACACGACCCGATTGTTTTGTTCTGTTTGTCACCACGCACGAACGT
GAGGTGATACCGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_22098 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g15320.1	565	0.0	protein\|glyoxal oxidase-related, putative, expressed
Brachypodium v1_2	Bradi1g67590.1	570	0.0
Arabidopsis v10	AT1G75620.1	547	3e-158	glyoxal oxidase-related protein \| chr1:28394951-28396594 REVERSE LENGTH=547