- Probe CUST_39258_PI390587928
- Source Contig U35_22099
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39258_PI390587928 | Hv_44K_v2 | TAGAGTCCAGAAATAAGGGTGGTTGTGATGGCTGTACAATTTTCGAAAATTATGACATTA | 406 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.516 | 1.812 | 1.283 | 0.579 | 0.105 | 0.078 |
| Raw | 41450.833 | 44557.867 | 28671.233 | 18843.923 | 1367.902 | 1070.235 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_39871.1 | 577 | 8e-25 | 440 - 499 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17783 | 489 | 3e-25 | 397 - 456 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17782 | 518 | 1e-23 | 401 - 460 | 98 | 59 / 60 | plus | ABC17782 |
| Harvest35 | U35_22099 | 524 | 3e-25 | 407 - 466 | 100 | 60 / 60 | plus |
Contig Sequence (524 bp)
>U35_22099 524 Hv_44K_v2 GCACAAGGCAGGCAAACCACACAAGGCAGGCTCCTTACGTAATTATTCACTGTTGTTTTC GCACCAGCCATGAAGAGAGCTTCCTGTTCTTCTGCCATGACAATCCTAGCTATCTTATTC ATTTGTTGCTCCTTGCCATGCTCAGTTGCCACCCAAGTTCACACGCAGGGAACCCGTCAT GGAGTGAGTCCTCCATCACCATGGGCACCGCCGAGCCCAGATAATCGAGGCCGTGGACAT TCCGAGACCCCACCGCCGCTGCTGCACGGCAAGAACTTACAGCTACAACATACTGTTGTG CCAGTTCCACCGATGGCATGAATTATCTCGCAGAAGTCTTGCAAACTTTATCGATCGTTT TAGTTTTTGCCAGTGTTAGGTGATGCCAGTGGCATTAATATGGTCCTAGAGTCCAGAAAT AAGGGTGGTTGTGATGGCTGTACAATTTTCGAAAATTATGACATTAATTGAAAGGTATAT TTACATGACAATCCCATGGAACCACATAAAAAAAAAAAAAAAAA
Homology of Contig U35_22099 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |