barSeed - Barley Seed Development Database

Probe CUST_39251_PI390587928

Source Contig U35_8902

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39251_PI390587928	Hv_44K_v2	ATGTATCCTGTAGGTAACTGTTGTATCACTTCAGTAGCACCGTCTTCGTTGTGTAAAAAA	689	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.015	1.327	1.334	1.308	0.616	0.464
Raw	139.727	294.907	251.661	377.415	64.549	52.049

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1649.3	1319	3e-21	516 - 569	100	54 / 54	minus	None
Harvest21	ABC44464	394	3e-25	7 - 66	100	60 / 60	minus
Harvest35	U35_8902	755	3e-25	690 - 749	100	60 / 60	plus

Contig Sequence (755 bp)

>U35_8902 755 Hv_44K_v2
CGCAACCACCCTTTCTGCCTCGCCCCGCCCCTCATGCCACTCGCCGCCATTCTGCCCGTC
CCACCCCTCCCGCTGCTCGCCGTCACCGGAATCGCCGAGATGACTGGCCTCCATGGCAAG
CACGCCACCAGCGAACCCCGAAGATCCAAGTGGCAGCCTGAGCGGTCCAGGCCCGACGCG
AAGGTTACGGAGCCTCCGGCACGCCGGGCCAAGCGCGCCGATGTCGTCCATGCTCCTCCG
CGCAAGCGCGGGTCTGCGAGGGTTGCGCGACCACCCCACCCCCTTGACAGCGAACTGGGC
TCGGAAGACGCGATTGCGGCGATTCCTCCAGCACGTCGGGCGGAGGCGTTGCGGAGGGCT
CCGTTCCGGCAGCGAGCGTCGCGCTATCATCTTCACCCCTTGACCAAGGTTGTCTCTTGA
ATGATGTCGCCATGCCTCCTCCTCCTCCTCCGGCAGGCCGACGCCCCGGCTCCGCCCAAG
CGCAAGGGGTCGTCTGCCTGGCCTGACAGCGCGTACCGGCTCCGCAACCGCCGAGTCCCG
GATATCAGCAAACACGAGCCCACCCCTCCTCGGTCCTCTNTATGTATATATCCAGCCCCG
CACCGCAATCAATTCCACAACTTTATTTTCGCAATGTGCGGAATGCTTTGGATTTTGGTT
GATGGGTGCTGAATTTCTGGTGCACTGTGATGTATCCTGTAGGTAACTGTTGTATCACTT
CAGTAGCACCGTCTTCGTTGTGTAAAAAAAAAAAA

Homology of Contig U35_8902 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None