barSeed - Barley Seed Development Database

Probe CUST_39248_PI390587928

Source Contig U35_46052

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39248_PI390587928	Hv_44K_v2	AAGTAACCATGGATAGAAAAGCCGGAGTGGTTTTAGTCTGCCTGCTCTTCCTACTCATTG	46	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354521	2257	2e-24	386 - 445	100	60 / 60	plus	ABC14997
MLOC	MLOC_10103.2	1716	2e-24	1499 - 1558	100	60 / 60	minus	ABC14997
MLOC	MLOC_10103.3	2154	2e-24	1937 - 1996	100	60 / 60	minus	ABC14997
MLOC	MLOC_10103.4	1927	2e-24	1710 - 1769	100	60 / 60	minus	ABC14997
MLOC	MLOC_10103.1	2122	2e-24	1840 - 1899	100	60 / 60	minus	ABC14997
JLOC1	JLOC1_6588.2	1054	8e-25	200 - 259	100	60 / 60	plus
JLOC1	JLOC1_6588.1	2187	8e-25	222 - 281	100	60 / 60	plus
Harvest21	ABC45606	318	3e-25	47 - 106	100	60 / 60	plus
Harvest35	U35_46052	318	3e-25	47 - 106	100	60 / 60	plus

Contig Sequence (318 bp)

>U35_46052 318 Hv_44K_v2
CCTGATTCCGCCCGGGGCTTATGAGCTTGCTGAATATCTGAAGCACAAGTAACCATGGAT
AGAAAAGCCGGAGTGGTTTTAGTCTGCCTGCTCTTCCTACTCATTGGGGAAGTTTCGGCG
GTTGCCCAGACCGAGATTGGTCATGTGCGTGTAACACGGGAGGCACCAGATGTGAAGCTA
GAGGATGCTGGTAGACAGGATGCGTCCAAAGGTGGAAGGGTGTCGGTGTATGTTGTTGCA
TGGTCTACGCTTGCCATGGCTGCGGCAACAGGGTTGGGAGCAGTCCCCTTCTTTTTCCTG
GAGCTAGAGGCCGAATGG

Homology of Contig U35_46052 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None