barSeed - Barley Seed Development Database

Probe CUST_3923_PI390587928

Source Contig U35_49352

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3923_PI390587928	Hv_44K_v2	TCTGCAGAAGCCACGACATCTCCTTAGGATGGGGTGTGTTCAACAATGTAGACACTAATA	411	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.111	1.313	1.135	0.934	0.393	0.408
Raw	301.276	574.932	423.607	562.011	79.513	91.304

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78431.1	3409	7e-23	137 - 196	98	59 / 60	minus	ABC17426
MLOC	MLOC_78431.2	3286	7e-23	137 - 196	98	59 / 60	minus	ABC17426
JLOC1	JLOC1_52274.4	3605	4e-23	3215 - 3274	98	59 / 60	plus
JLOC1	JLOC1_52274.3	3481	4e-23	3091 - 3150	98	59 / 60	plus
JLOC1	JLOC1_52274.2	3910	4e-23	3520 - 3579	98	59 / 60	plus
JLOC1	JLOC1_52274.1	2826	4e-23	2436 - 2495	98	59 / 60	plus
Harvest21	ABC50991	474	3e-25	412 - 471	100	60 / 60	plus
Harvest35	U35_49352	474	3e-25	412 - 471	100	60 / 60	plus

Contig Sequence (474 bp)

>U35_49352 474 Hv_44K_v2
TGTTGGGGCAATTGATGAGGATTGGTTGTACCAAAGCTCATCAGCAGTAAGCTTTAGTTC
ATATCTGGACGACATTACTGTATACTTCCAAACGATGCCACAAACGACGTCTGCAGTTGC
ACTCTGGGTTGTCAAATTGGATGCCCTCATTGCACCTCATTTGGCTGGCAGAGGATTAGG
CAAAGGGTTCATACAGACAAGAGCTCAGGCATGCGTGAGATAGCTAGGAAGGAACTAGAT
GGATTATTTTGTATGGTGCTCCAGCAAAGCACCCAGCTGCCACTACTCTTTTTTGCATCA
GTTTCAATCTTTGGATTGATGTCCGTGCTTTTTCTCGAGGCGAGACGGCCATGATGCCCT
TGTTTTCTGCCTTGATCTTGATGCCTTCACCTTCGAGGCTATGATCTTAACTCTGCAGAA
GCCACGACATCTCCTTAGGATGGGGTGTGTTCAACAATGTAGACACTAATAAAT

Homology of Contig U35_49352 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None