barSeed - Barley Seed Development Database

Probe CUST_39235_PI390587928

Source Contig U35_5855

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39235_PI390587928	Hv_44K_v2	GGCCCAAAAATGTTGCTCCAACAGATGATGTAGATGCAAAATAAAAAATTACATCTTCAC	1212	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.268	0.324	0.738	1.584	1.420	1.598
Raw	60.354	119.796	233.066	753.620	246.921	298.834

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2769.2	2274	7e-23	7 - 66	98	59 / 60	minus	ABC13226
MLOC	MLOC_2769.1	2788	7e-23	8 - 67	98	59 / 60	minus	ABC13226
JLOC1	JLOC1_1646.1	2365	4e-23	2279 - 2338	98	59 / 60	plus
Harvest21	ABC13226	1300	3e-25	1213 - 1272	100	60 / 60	plus	ABC13226
Harvest35	U35_5855	1300	3e-25	1213 - 1272	100	60 / 60	plus

Contig Sequence (1300 bp)

>U35_5855 1300 Hv_44K_v2
GGAAGCTCTCGGGCTTACAGGTGTCAAAAGACCTTCGTCAGCAGCCGGGCGCGTCACTTC
TATCGGAGAGCGGCAACCCATCACCACCAGGGCAATCGTTAAGAAGCCCGCTGTTGTCTC
CACCACAGGACGCCCTTCCACTGCCGAAAGACGCCCTGTCACCAGAGAGCGTACACAGAA
GCAAGCTTCTGTTGCCACACCATGCCGGCCTTCTACCTCTGAAAGACGCCCTGTTGACAG
AGGAAGTGCAGCAAAACATTCTGATATTGCGAGTACACGCCGGCCCTCTACAGGAGAAAG
ACGTGGTATCACCAGGGATAGCAAGACCGGATCGAGTGTGGCACATCCGAAGGTTTCAAC
AACTACTGTGAGCACTCTGAAAAAGGCCGCCCTTCCGAATGCGACTAAAAGTACCAAGCT
GGAGCCAAAAAGCAATATCAGAGAATCTAGAGGTCCTTCAACATTTGACAGTCACTTAAC
TAGGCCAAAAAGAATGGACTTGCAAGTGGCCGGGAAACAGAAATCAAGCTCGGTAAACCT
TCCAGCAAGGAGAATGCTGAGTTCCAGTGTTGGAGAAGCAACTTTTGCAAGGCTGAAAAA
GAAAGAGGGCATTCCGGCGACAGTGCAATCTCGAGCATCCGCATCGAAGAAAACAACTCC
TTTGCAGACAGGAAACTCCAAGCCTAAGGCACCAAACCCACCGACGCCGCCGCCTCCACC
GCGTCGTCCGTCCAGAACAGAGAGCAAGCCAACCGCCAGAGGCTCATCAGTTGGTGGAAG
AAAGCCAAAGGCCTCGACACCACAATGGCATTGATGCATGGGGAACATTCAAGCTAGTGG
CCTACATAAACTGTGGATCTGTGAGACACCTTACGGTTGCACGCATCTAAAAGCACTGCA
CGGGCTTTCTGCACCATCCAATTTCATCTTATGATGTTTGTGCGCATCGATCATTTCCAT
CAAGCACCCTCCTCGATGTCGTTCCTGGCTTCGTCATGCAAGGGACTTAGAACAGTGTAT
ACTGTATATACTACATCAAGTAAGTTATGTTCTAGATGATGTAAGATAAGATTAGCCGAA
ACGTCGGGACAGGAAGAAATGTGGCGTGTCCAATTGAACTTCATATGTGAGAGTAGTATA
TATCATTGATGCTTAAGAGCATCTCCAATAGAAGATGTAGATGCAAAAATAGGCTATCTT
TTGCATATTCGAGGCCCAAAAATGTTGCTCCAACAGATGATGTAGATGCAAAATAAAAAA
TTACATCTTCACTTTTCGGAGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_5855 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66200.1	574	2e-58	protein\|expressed protein
Brachypodium v1_2	Bradi2g57180.1	579	4e-88
Arabidopsis v10	None