barSeed - Barley Seed Development Database

Probe CUST_39228_PI390587928

Source Contig U35_5862

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39228_PI390587928	Hv_44K_v2	GGTCATACTTAAAAGTTAGTACTTAGTATAAGGACAGGCACACGCTCTTGCTGTTTTATT	762	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.971	1.846	1.125	0.829	0.372	0.461
Raw	391.565	584.331	303.872	346.880	56.085	75.035

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371353	1639	7e-23	1473 - 1532	98	59 / 60	plus	ABC12585
MLOC	MLOC_48441.1	577	7e-23	369 - 428	98	59 / 60	minus	ABC12585
JLOC1	JLOC1_31114.1	456	4e-23	248 - 307	98	59 / 60	minus
Harvest21	ABC12585	822	3e-25	763 - 822	100	60 / 60	plus	ABC12585
Harvest35	U35_5862	822	3e-25	763 - 822	100	60 / 60	plus

Contig Sequence (822 bp)

>U35_5862 822 Hv_44K_v2
GCAGGTTGATGGTGGCTCGAGCTCCTCCAATGGAGGCCCCGCCGCTACGCTGCCCGCACT
GGAGTGAGGCCCCGTCTGTCGAAGGCGCTCCTCGCTCGTCGAGTCAAGAGCATACCGGGT
ACCTTCACGTCAAAAATCACTTATTTGAACTCATTCACATGCCCTCTAATTGAAGAAGTA
CATGCTGATGTATTTTCAGCATTGGATGAATATGCTCAATCGAACTTTATAAAAACAATC
TGGGTGGAGAAGCTTGATGATGAGAAATCAATATTCTGTTTTGAGGTTGCGGAGCCAGCA
AAGGATCCTAAGTCAAGGGAGACATACGATCCCAAAGGAGGGGACATAATAGTTGTTTCC
TTGCGGAAACCGCAGCATGTATCTGATTTGATACAAAATAAGGCATCTTATGTTTTAGGT
TCAGTTCTAAAATGTGGAGACAAAGATGGAGATTTCCCACCCAATTGTTGCATTGTTCGG
TTTTCAGCTGCTATTCCAATTGAAGTAGATCCAGAAACAAAATTGCCTGTGGCGCCATCA
TTTGCTGTGTTTCTCATAAATATGAAGACATACATTCGGATCTGGAAGGTGCCTTCGTAT
GGAAGTAGAAAACCAGAACAGAAGCAGTAGTACTGGCATCGTTGATCTGGTGTGGCAATA
CAAGCGAAGGGTATGCCAGATGTTTACATTTAAAATTAAGTTTAGGTCCTTTTTGATAGC
TTACTATGCCTGGCATCAACATATATATGTGTGTGTTATAAAGGTCATACTTAAAAGTTA
GTACTTAGTATAAGGACAGGCACACGCTCTTGCTGTTTTATT

Homology of Contig U35_5862 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g49270.1	814	3e-55	protein\|tRNA-splicing endonuclease positive effector-related, putative, expressed
Brachypodium v1_2	Bradi5g19290.1	842	8e-74
Arabidopsis v10	None