barSeed - Barley Seed Development Database

Probe CUST_39227_PI390587928

Source Contig U35_5863

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39227_PI390587928	Hv_44K_v2	GGCCTACATGCTAATATTGTACACGAATGAATGCTTCACTTATTTATACCTAATCAGCTT	1494	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.094	1.331	1.446	0.984	0.148	0.252
Raw	75.177	144.861	138.569	154.157	7.774	14.600

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371994	2333	2e-24	2212 - 2271	100	60 / 60	plus	ABC14340
MLOC	MLOC_45367.1	1051	7e-23	17 - 76	98	59 / 60	minus	ABC14340
MLOC	MLOC_45367.2	1035	7e-23	3 - 62	98	59 / 60	minus	ABC14340
JLOC1	JLOC1_29451.4	410	4e-23	319 - 378	98	59 / 60	plus
JLOC1	JLOC1_29451.3	433	4e-23	342 - 401	98	59 / 60	plus
JLOC1	JLOC1_29451.2	778	4e-23	687 - 746	98	59 / 60	plus
JLOC1	JLOC1_29451.1	465	4e-23	374 - 433	98	59 / 60	plus
Harvest21	ABC14340	695	3e-25	52 - 111	100	60 / 60	minus	ABC14340
Harvest35	U35_5863	1605	3e-25	1495 - 1554	100	60 / 60	plus

Contig Sequence (1605 bp)

>U35_5863 1605 Hv_44K_v2
GGCGAATTGGGCCCATTCGATAATGCTCGAGCGGCCGCTGGTTAACCAAGTCTTCTTAGA
TGCATGGCATCATTCAGTCCAGCCAAGTCATTTTCTGCTTTTAATGTTGAGAACCTCGTT
AAGCTTGCGGAGTTCTATCCTCATGATTTTGAATTAGAAGAATTGGTCCAGCTGCCTTTT
CAACTGAACCGCTATATCAATGATGTGAGAAATGATGAAAACTTCACAAATTTGAGAAGT
CTAGCGGAGTTGTCTATGATGCTTGTTAAAACAGATAGGATTCTTCGGTATGACATTGTT
TACAAACTTCTGAAATTGGTGCTAGTTCTTCCTGTTGCAACAGCTGATGTTGAGAGGGTC
TTTTCTTCAATGAATTATATTAAAAACAAACTCAGAAGCAAGATGGGACAAATGTTTTTG
AATGAATGCTTGGTCACATTCATTGAAAGGGAATTCTTCCAGCAAGTTAAGGATGAGGAC
ATCATTACTAGTTTCCAAGCCTTAAAGAGTCGGAAAGTTAACCTGTAATTTGTAAGCTTT
CCTACCATTTTCGTTTTTATGTTTTCTTATTCAGATATTTATTCTTTGATATGTTGAGAA
ATTGGTACCCACATGAGCGGCCGCTCCTAAATATGCACGGAAGAGAATCACTTTAGCTGG
TGGGAAACACATTATCCGTGGTACGAAACTACTACCTGTATCACCCCTTATTTATATCAT
AGACTGACATGGATTACCTGTTACGGGTATCCATGGTCACTGATGAGGTAAGTGGCCAAG
GTGAGATCAGGAAGAGGTGGTGCCATAAATGAACTTAATTGACAAGATCACAGGTAAAAA
TAATATGGTTTGAAGTGTTTTCCAAGTTCTGCGCCTTTCCTTGTTAAATGTCTAAAAAGA
AATAAGAAAATCATACTGAATGTGGAGCTTCATTGCATCACATTTATAGCAATGATACTA
TTAAATTTCATTTGCGTTCATGGGTTCTCACTCGTAAAAAATTAATAGTATAACCTCCAA
CCACTACATAAAGACTGATATGTCCCTTCGGTTGGTTGTTTTATTTTTCTCTGTTGTAGA
ATAGAAATGGTATATGTGCATCTATTTTCCCCGCGTCGTATTTTCACTGCCAATCACTAA
GTAAGGTCTTAACTTCTTCAAAAGGTTCTTTCCCCAAATGTTTTTGTGTGTGTGCAACTA
CAGCTGGTTTTCCTATTCCTTTATTGTACACTTTTATTCTGCAGAAGCGCATGGAAGACA
TGAAGCAAAAGGTTAATTATGAGGACGGCGACAGACTATATATCTTAATTACCAGAAGTT
GGGGAATCAAAGCAATCTACATGATGCATCTCTTCTATTTAGTTTTGCTTACCATAAACT
GGTTTCATGCCTTTTAACCTATGAATCTATCATCAATGCAATATATAGGGCTTCTTATGA
AGTATTTCCTTATGTTTAAAGAATATCGGTGTCTAAGAATGGAACCATATCCTAGGCCTA
CATGCTAATATTGTACACGAATGAATGCTTCACTTATTTATACCTAATCAGCTTTGTAAA
AAAAAAAAAAATATTAGCTTTTGTACCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5863 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g36530.1	850	2e-58	protein\|hAT dimerisation domain-containing protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None