barSeed - Barley Seed Development Database

Probe CUST_39224_PI390587928

Source Contig U35_5866

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39224_PI390587928	Hv_44K_v2	GATGTGTGCATCATGACTATTCGCATGTTTGTTTTTGCATTACTCCCTAGATTGATTTTC	1418	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.780	2.354	1.569	0.717	0.122	0.105
Raw	3178.593	3213.823	1734.067	1180.860	79.015	71.564

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55936.1	1626	2e-24	147 - 206	100	60 / 60	minus	ABC03332 ABC13623
MLOC	MLOC_55936.2	1556	7e-23	1433 - 1492	98	59 / 60	plus	ABC13623
JLOC1	JLOC1_36123.1	1823	8e-25	1556 - 1615	100	60 / 60	plus
Harvest21	ABC13623	1602	3e-25	1419 - 1478	100	60 / 60	plus	ABC13623
Harvest35	U35_5866	1602	3e-25	1419 - 1478	100	60 / 60	plus

Contig Sequence (1602 bp)

>U35_5866 1602 Hv_44K_v2
GGCCCGGCATCCGGCAGCACACACTGCATTAGTTAGCAAATGGCTCACGTGGTGGAGGGC
ATCGTGGCGCTTTTCCTCATCCTCCTCGCCGCGTCGGTAGAGATAGCCCTGGCGCGCGCG
GCCACGGGGCCGCCGGCGGGGAAGTACGCCGTGATCTTGGACGCGGGCAGCACGGGGACG
CGTATGCACGTCTTCCGGTTTGACAAGCGGATGGATCTCGTCAAGATCGGCGACGACATC
GAGGTCTTCGCCAAGGTGAATCCTGGTCTGAGTTCGTACGCTGGACGGCCCAAGGAGGCT
ACCAAGTCCATACTACCGCTGCTTCAAGAGGCCAACAGCGCCGTGCCTCAGAGGCTTATG
AAGACGACTCCGGTTAAACTAGGGGCGACGGCCGGACTCAGGCTGATCGGAGATAAGCAA
GCAGAGCAGATACTTGACGCCGTCAGGGGCGCTGTCCACACTAAGACCAAGTTTCAGTAC
AATCCCAAGTGGATCAATGTTCTCGAGGGATCTCAGGAAGGATCCTACCTATGGGTGGCT
CTGAATTACCTTTTGGATAAGTTGGGAGGAGACTACTCTAAAACGGTAGGTGTGATTGAT
CTTGGAGGTGGGTCTGTGCAAATGGCATATGCAATTTCTCCTACCGCCGCAGCTGCCGCT
CCACAAGTGCCTCATGGCAAGGATCCTTATGTTACAAAAGAGTATCTCAAGGGAAGAGAT
TACAACGTCTATGTTCACAGCTACTTACGCTACGGTGCCTTAGCTTCTCGCGTAGAGATC
TTCAAGGCCAAGGAAGGACCATTTAGCTACTGCATGCTGCGTGGCTTTAGTGGCAAATAC
ACCTACAACGGTGAGGAGTACAATGCTACCGCGTCAATAGGAGGTGCACAATACGGGAAG
TGCAGAGGTGATGTAGTGAAGGCACTCAAACTTGACGTGCCCTGCCAAGCCAAGAAGTGT
GCCTTCGACGGCGTGTGGAATGGCGGGGGCGGTCCCGGCCAGGCCAACCTCTACGTCGCA
TCTAGCTTCTACTACATGGCCTCACAGGTTGGCCTCATCGACAGCGATGCTCCAAGCGGG
ACATCCACCCCAGCAGCTTTCAAAGCCATTGCCCAGAAGATATGTAGGATGAGCATGAAA
GAAGTGAAGGCTAAGTACCCCAAAGTCCGTGACATACCCTACGTTTGCATGGACCTCGTC
TATCAATACTCCCTGCTCATCGATGGATTTGGTTTGGAGCCCACCAAAAAGATCACACTG
GTCCAGAAGGTGAAGCATGGGGAGTACTTCATTGAAGCGGCATGGCCTCTCGGAGAAGCT
ATTGAAGCCGTGGCACCCAAAAAGGGCACTTGACAATATATGTCTGATGATACACTCGAC
ATCGGATGAAGATTCACACAACCATAAGCTTCACATAGGATGTGTGCATCATGACTATTC
GCATGTTTGTTTTTGCATTACTCCCTAGATTGATTTTCCTTTCTAATTTCAAATAATGGC
TTTGATAATAATAAAAATTGTTAAGAAATTAGATGAAGATTGCTCACTCTCCTAAATATG
TGAAGACCAAGATTTGATTTCCAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_5866 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g03290.1	458	0.0	protein\|nucleoside-triphosphatase, putative, expressed
Brachypodium v1_2	Bradi3g06420.1	455	0.0
Arabidopsis v10	AT3G04080.1	471	1e-132	\| Symbols: ATAPY1, APY1 \| apyrase 1 \| chr3:1068068-1070917 REVERSE LENGTH=471